Maximum-likelihood signal estimation in phase contrast magnitude MR images. - Arnold Jan den Dekker; Jan Sijbers; Marleen Verhoye; Dirk Van Dyck (Image Processing, 1998)

Optimal estimation of T2 maps from magnitude MR images. - Jan Sijbers; Arnold Jan den Dekker; Marleen Verhoye; Erik R. R. Raman; Dirk Van Dyck (Image Processing, 1998)

Adaptive anisotropic noise filtering for magnitude MR data. - Jan Sijbers; Arnold Jan den Dekker; Marleen Verhoye; Annemarie van der Linden; Dirk Van Dyck (Image Processing, 1999)

Automatic EEG signal restoration during simultaneous EEG/MR acquisitions. - Jan Sijbers; Ive Michiels; Johan Van Audekerke; Marleen Verhoye; Annemarie van der Linden; Dirk Van Dyck (Image Processing, 2000)

Automatic detection of EEG electrode markers on 3D MR data. - Jan Sijbers; Bart Vanrumste; Gert Van Hoey; Paul Boon 001; Marleen Verhoye; Annemarie van der Linden; Dirk Van Dyck (Image Processing, 2000)

Simultaneous electroencephalographic recording and functional magnetic resonance imaging during pentylenetetrazol-induced seizures in rat. - Nadja Van Camp; Rudi D'Hooge; Marleen Verhoye; Ronald R. Peeters; Peter Paul De Deyn; Annemarie van der Linden (NeuroImage, 2003)

Differential effects of testosterone on neuronal populations and their connections in a sensorimotor brain nucleus controlling song production in songbirds: a manganese enhanced-magnetic resonance imaging study. - Vincent Van Meir; Marleen Verhoye; Philippe Absil; Marcel Eens; Jacques Balthazart; Annemarie van der Linden (NeuroImage, 2004)

Spatiotemporal properties of the BOLD response in the songbirds' auditory circuit during a variety of listening tasks. - Vincent Van Meir; Tiny Boumans; Geert De Groof; Johan Van Audekerke; Alain Smolders; Paul Scheunders; Jan Sijbers; Marleen Verhoye; Jacques Balthazart; Annemie van der Linden (NeuroImage, 2005)

Robust estimation of the noise variance from background MR data. - Jan Sijbers; Arnold J. den Dekker; Dirk H. J. Poot; Robert Bos; Marleen Verhoye; Nadja Van Camp; Annemie van der Linden (Image Processing, 2006)

In vivo diffusion tensor imaging (DTI) of brain subdivisions and vocal pathways in songbirds. - Geert De Groof; Marleen Verhoye; Vincent Van Meir; Ilse Tindemans; Alexander Leemans; Annemarie van der Linden (NeuroImage, 2006)

In vivo MR imaging of the seasonal volumetric and functional plasticity of song control nuclei in relation to song output in a female songbird. - Vincent Van Meir; Denitza Pavlova; Marleen Verhoye; Rianne Pinxten; Jacques Balthazart; Marcel Eens; Annemarie van der Linden (NeuroImage, 2006)

Susceptibility correction for improved tractography using high field DT-EPI. - Wouter Pintjens; Dirk H. J. Poot; Marleen Verhoye; Annemarie van der Linden; Jan Sijbers (Image Processing, 2008)

A three-dimensional MRI atlas of the zebra finch brain in stereotaxic coordinates. - Colline Poirier; Michiel Vellema; Marleen Verhoye; Vincent Van Meir; J. Martin Wild; Jacques Balthazart; Annemie van der Linden (NeuroImage, 2008)

Diffusion Tensor Images Upsampling: A Registration-Based Approach. - Zhenhua Mai; Marleen Verhoye; Annemie van der Linden; Jan Sijbers (IMVIP, 2009)

Diffusion tensor images edge-directed interpolation. - Zhenhua Mai; Wolfgang Jacquet; Marleen Verhoye; Jan Sijbers (ISBI, 2010)

Non-rigid coregistration of diffusion kurtosis data. - Jelle Veraart; Wim Van Hecke; Ines Blockx; Annemie van der Linden; Marleen Verhoye; Jan Sijbers (ISBI, 2010)

MRI visualization of endogenous neural progenitor cell migration along the RMS in the adult mouse brain: Validation of various MPIO labeling strategies. - Ruth Vreys; Greetje Vande Velde; Olga Krylychkina; Michiel Vellema; Marleen Verhoye; Jean-Pierre Timmermans; Veerle Baekelandt; Annemie van der Linden (NeuroImage, 2010)

Optimal Experimental Design for Diffusion Kurtosis Imaging. - Dirk H. J. Poot; Arnold J. den Dekker; Eric Achten; Marleen Verhoye; Jan Sijbers (IEEE Trans. Medical Imaging, 2010)

Robust edge-directed interpolation of magnetic resonance images. - Zhenhua Mai; Jeny Rajan; Marleen Verhoye; Jan Sijbers (BMEI, 2011)

A maximum likelihood estimation method for denoising magnitude MRI using restricted local neighborhood. - Jeny Rajan; Marleen Verhoye; Jan Sijbers (Image Processing, 2011)

Genotype specific age related changes in a transgenic rat model of Huntington's disease. - Ines Blockx; Nadja Van Camp; Marleen Verhoye; Raphaël Boisgard; Albertine Dubois; Benoit Jego; Elisabeth Jonckers; Kerstin Raber; Karine Siquier; Bertrand Kuhnast; Frédéric Dollé; Huu Phuc Nguyen; et al. (NeuroImage, 2011)

Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain. - Jelle Veraart; Trygve B. Leergaard; Bjørnar T. Antonsen; Wim Van Hecke; Ines Blockx; Ben Jeurissen; Yi Jiang; Annemie van der Linden; G. Allan Johnson; Marleen Verhoye; Jan Sijbers (NeuroImage, 2011)

An adaptive non local maximum likelihood estimation method for denoising magnetic resonance images. - Jeny Rajan; Johan Van Audekerke; Annemie van der Linden; Marleen Verhoye; Jan Sijbers (ISBI, 2012)

Microstructural changes observed with DKI in a transgenic Huntington rat model: Evidence for abnormal neurodevelopment. - Ines Blockx; Geert De Groof; Marleen Verhoye; Johan Van Audekerke; Kerstin Raber; Dirk H. J. Poot; Jan Sijbers; Alexander P. Osmand; Stephan Von Hörsten; Annemie van der Linden (NeuroImage, 2012)

Identification and characterization of Huntington related pathology: An in vivo DKI imaging study. - Ines Blockx; Marleen Verhoye; Johan Van Audekerke; Irene Bergwerf; Jack X. Kane; Rafael Delgado y Palacios; Jelle Veraart; Ben Jeurissen; Kerstin Raber; Stephan Von Hörsten; Peter Ponsaerts; Jan Sijbers; et al. (NeuroImage, 2012)

Quantitative evaluation of MRI-based tracking of ferritin-labeled endogenous neural stem cell progeny in rodent brain. - Greetje Vande Velde; Janaki Raman Rangarajan; Ruth Vreys; Caroline Guglielmetti; Tom Dresselaers; Marleen Verhoye; Annemie van der Linden; Zeger Debyser; Veerle Baekelandt; Frederik Maes; Uwe Himmelreich (NeuroImage, 2012)

Magnetization transfer contrast imaging reveals amyloid pathology in Alzheimer's disease transgenic mice. - Christian Bigot; Greetje Vanhoutte; Marleen Verhoye; Annemie van der Linden (NeuroImage, 2014)

Multimodal imaging of subventricular zone neural stem/progenitor cells in the cuprizone mouse model reveals increased neurogenic potential for the olfactory bulb pathway, but no contribution to remyelination of the corpus callosum. - Caroline Guglielmetti; Jelle Praet; Janaki Raman Rangarajan; Ruth Vreys; Nathalie De Vocht; Frederik Maes; Marleen Verhoye; Peter Ponsaerts; Annemie van der Linden (NeuroImage, 2014)

Simultaneous motion correction and T1 estimation in quantitative T1 mapping: An ML restoration approach. - Gabriel Ramos-Llordén; Arnold J. den Dekker; Gwendolyn Van Steenkiste; Johan Van Audekerke; Marleen Verhoye; Jan Sijbers (ICIP, 2015)

Longitudinal monitoring of metabolic alterations in cuprizone mouse model of multiple sclerosis using 1H-magnetic resonance spectroscopy. - Jasmien Orije; Firat Kara; Caroline Guglielmetti; Jelle Praet; Annemie van der Linden; Peter Ponsaerts; Marleen Verhoye (NeuroImage, 2015)

Acute modulation of the cholinergic system in the mouse brain detected by pharmacological resting-state functional MRI. - Disha Shah; Ines Blockx; Pieter-Jan Guns; Peter Paul De Deyn; Debby Van Dam; Elisabeth Jonckers; Rafael Delgado y Palacios; Marleen Verhoye; Annemie van der Linden (NeuroImage, 2015)

Diffusion kurtosis imaging probes cortical alterations and white matter pathology following cuprizone induced demyelination and spontaneous remyelination. - Caroline Guglielmetti; Jelle Veraart; E. Roelant; Zhenhua Mai; J. Daans; Johan Van Audekerke; Maarten Naeyaert; Greetje Vanhoutte; Rafael Delgado y Palacios; Jelle Praet; Els Fieremans; Peter Ponsaerts; et al. (NeuroImage, 2016)

Resting-state functional MRI and [18F]-FDG PET demonstrate differences in neuronal activity between commonly used mouse strains. - Disha Shah; Steven Deleye; Marleen Verhoye; Steven Staelens; Annemarie van der Linden (NeuroImage, 2016)

Exploring sex differences in the adult zebra finch brain: In vivo diffusion tensor imaging and ex vivo super-resolution track density imaging. - Julie Hamaide; Geert De Groof; Gwendolyn Van Steenkiste; Ben Jeurissen; Johan Van Audekerke; Maarten Naeyaert; Lisbeth Van Ruijssevelt; Charlotte Cornil; Jan Sijbers; Marleen Verhoye; Annemie van der Linden (NeuroImage, 2017)

A Unified Maximum Likelihood Framework for Simultaneous Motion and T1 Estimation in Quantitative MR T1 Mapping. - Gabriel Ramos-Llordén; Arnold J. den Dekker; Gwendolyn Van Steenkiste; Ben Jeurissen; Floris Vanhevel; Johan Van Audekerke; Marleen Verhoye; Jan Sijbers (IEEE Trans. Medical Imaging, 2017)

Faint and clustered components in exponential analysis. - Annie A. M. Cuyt; Min-nan Tsai; Marleen Verhoye; Wen-shin Lee (Appl. Math. Comput., 2018)

Dynamic resting state fMRI analysis in mice reveals a set of Quasi-Periodic Patterns and illustrates their relationship with the global signal. - Michaël E. Belloy; Maarten Naeyaert; Anzar Abbas; Disha Shah; Verdi Vanreusel; Johan Van Audekerke; Shella D. Keilholz; Georgios A. Keliris; Annemarie van der Linden; Marleen Verhoye (NeuroImage, 2018)

Volumetric development of the zebra finch brain throughout the first 200 days of post-hatch life traced by in vivo MRI. - Julie Hamaide; Geert De Groof; Lisbeth Van Ruijssevelt; Kristina Lukacova; Johan Van Audekerke; Marleen Verhoye; Annemarie van der Linden (NeuroImage, 2018)

Neuroplasticity in the cerebello-thalamo-basal ganglia pathway: A longitudinal in vivo MRI study in male songbirds. - Julie Hamaide; Kristina Lukacova; Johan Van Audekerke; Marleen Verhoye; Lubica Kubikova; Annemie van der Linden (NeuroImage, 2018)

A three-dimensional digital neurological atlas of the mustached bat (Pteronotus parnellii). - Stuart D. Washington; Julie Hamaide; Ben Jeurissen; Gwendolyn Van Steenkiste; Toon Huysmans; Jan Sijbers; Steven Deleye; Jagmeet S. Kanwal; Geert De Groof; Sayuan Liang; Johan Van Audekerke; Jeffrey J. Wenstrup; et al. (NeuroImage, 2018)

Bottom-up sensory processing can induce negative BOLD responses and reduce functional connectivity in nodes of the default mode-like network in rats. - Rukun Hinz; Lore M. Peeters; Disha Shah; Stephan Missault; Michaël E. Belloy; Verdi Vanreusel; Meriam Malekzadeh; Marleen Verhoye; Annemie van der Linden; Georgios A. Keliris (NeuroImage, 2019)

Joint Maximum Likelihood Estimation of Motion and T1 Parameters from Magnetic Resonance Images in a Super-resolution Framework: a Simulation Study. - Quinten Beirinckx; Gabriel Ramos-Llordén; Ben Jeurissen; Dirk H. J. Poot; Paul M. Parizel; Marleen Verhoye; Jan Sijbers; Arnold J. den Dekker (Fundam. Informaticae, 2020)

Chemogenetic silencing of neurons in the mouse anterior cingulate area modulates neuronal activity and functional connectivity. - Lore M. Peeters; Rukun Hinz; Jan R. Detrez; Stephan Missault; Winnok H. De Vos; Marleen Verhoye; Annemie van der Linden; Georgios A. Keliris (NeuroImage, 2020)

Model-based super-resolution reconstruction with joint motion estimation for improved quantitative MRI parameter mapping. - Quinten Beirinckx; Ben Jeurissen; Michele Nicastro; Dirk H. J. Poot; Marleen Verhoye; Arnold J. den Dekker; Jan Sijbers (Comput. Medical Imaging Graph., 2022)

Delta-MRI: Direct Deformation Estimation from Longitudinally Acquired K-Space Data. - Jens Renders; Banafshe Shafieizargar; Marleen Verhoye; Jan De Beenhouwer; Arnold J. den Dekker; Jan Sijbers (ISBI, 2023)

Recurrence quantification analysis of rs-fMRI data: A method to detect subtle changes in the TgF344-AD rat model. - Arash Rezaei; Monica van den Berg; Hajar Mirlohi; Marleen Verhoye; Mahmood Amiri; Georgios A. Keliris (Comput. Methods Programs Biomed., 2024)