Dynamical hybrid modeling of human metabolism. - Marouen Ben Guebila (2018)

ACHR.cu: GPU accelerated sampling of metabolic networks. - Marouen Ben Guebila (J. Open Source Softw., 2019)

Predicting gastrointestinal drug effects using contextualized metabolic models. - Marouen Ben Guebila; Ines Thiele (PLoS Comput. Biol., 2019)

VFFVA: dynamic load balancing enables large-scale flux variability analysis. - Marouen Ben Guebila (BMC Bioinform., 2020)

Gene Regulatory Network Inference as Relaxed Graph Matching. - Deborah A. Weighill; Marouen Ben Guebila; Camila Miranda Lopes-Ramos; Kimberly Glass; John Quackenbush; John Platig; Rebekka Burkholz (AAAI, 2021)

Dynamic flux balance analysis of whole-body metabolism for type 1 diabetes. - Marouen Ben Guebila; Ines Thiele (Nat. Comput. Sci., 2021)

GRAND: a database of gene regulatory network models across human conditions. - Marouen Ben Guebila; Camila Miranda Lopes-Ramos; Deborah A. Weighill; Abhijeet Rajendra Sonawane; Rebekka Burkholz; Behrouz Shamsaei; John Platig; Kimberly Glass; Marieke L. Kuijjer; John Quackenbush (Nucleic Acids Res., 2022)

BONOBO: Bayesian Optimized Sample-Specific Networks Obtained by Omics Data. - Enakshi Saha; Viola Fanfani; Panagiotis Mandros; Marouen Ben Guebila; Jonas Fischer; Katherine H. Shutta; Kimberly Glass; Dawn L. DeMeo; Camila Miranda Lopes-Ramos; John Quackenbush (RECOMB, 2024)

SpaCeNet: Spatial Cellular Networks from Omics Data. - Stefan Schrod; Niklas Lück; Robert Lohmayer; Stefan Solbrig; Tina Wipfler; Katherine H. Shutta; Marouen Ben Guebila; Andreas Schäfer 005; Tim Beißbarth; Helena U. Zacharias; Peter J. Oefner; John Quackenbush; et al. (RECOMB, 2024)