Geometry of the Kimura 3-parameter model. - Marta Casanellas; Jesús Fernández-Sánchez (Adv. Appl. Math., 2008)

The space of phylogenetic mixtures for equivariant models. - Marta Casanellas; Jesús Fernández-Sánchez; Anna M. Kedzierska (Algorithms Mol. Biol., 2012)

GenNon-h: Generating multiple sequence alignments on nonhomogeneous phylogenetic trees. - Anna M. Kedzierska; Marta Casanellas (BMC Bioinform., 2012)

A new method of moments for latent variable models. - Matteo Ruffini; Marta Casanellas; Ricard Gavaldà (Mach. Learn., 2018)

Robust estimation of tree structured models. - Marta Casanellas; Marina Garrote-López; Piotr Zwiernik (CoRR, 2021)

Distance to the stochastic part of phylogenetic varieties. - Marta Casanellas; Jesús Fernández-Sánchez; Marina Garrote-López (J. Symb. Comput., 2021)

SAQ: Semi-Algebraic Quartet Reconstruction. - Marta Casanellas; Jesús Fernández-Sánchez; Marina Garrote-López (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

A Novel Algebraic Approach to Time-Reversible Evolutionary Models. - Marta Casanellas; Roser Homs; Angélica Torres (SIAM J. Appl. Math., 2024)

Generating Heterogeneous Data on Gene Trees. - Martí Cortada Garcia; Adrià Diéguez Moscardó; Marta Casanellas (J. Comput. Biol., 2025)