Sequential and parallel algorithms for DNA sequencing. - Jacek Blazewicz; Janusz Kaczmarek; Marta Kasprzak; Wojciech T. Markiewicz; Jan Weglarz (Comput. Appl. Biosci., 1997)

DNA Sequencing With Positive and Negative Errors. - Jacek Blazewicz; Piotr Formanowicz; Marta Kasprzak; Wojciech T. Markiewicz; Jan Weglarz (J. Comput. Biol., 1999)

Tabu search for DNA sequencing with false negatives and false positives. - Jacek Blazewicz; Piotr Formanowicz; Marta Kasprzak; Wojciech T. Markiewicz; Jan Weglarz (Eur. J. Oper. Res., 2000)

Construction of DNA restriction maps based on a simplified experiment. - Jacek Blazewicz; Piotr Formanowicz; Marta Kasprzak; Marcin Jaroszewski; Wojciech T. Markiewicz (Bioinform., 2001)

DNA Sequencing, Eulerian Graphs, and the Exact Perfect Matching Problem. - Jacek Blazewicz; Piotr Formanowicz; Marta Kasprzak; Petra Schuurman; Gerhard J. Woeginger (WG, 2002)

A heuristic managing errors for DNA sequencing. - Jacek Blazewicz; Piotr Formanowicz; Frédéric Guinand; Marta Kasprzak (Bioinform., 2002)

On the recognition of de Bruijn graphs and their induced subgraphs. - Jacek Blazewicz; Piotr Formanowicz; Marta Kasprzak; Daniel Kobler (Discret. Math., 2002)

Hybrid Genetic Algorithm for DNA Sequencing with Errors. - Jacek Blazewicz; Marta Kasprzak; Wojciech Kuroczycki (J. Heuristics, 2002)

Complexity of DNA sequencing by hybridization. - Jacek Blazewicz; Marta Kasprzak (Theor. Comput. Sci., 2003)

Parallel DNA Sequence Assembly. - Jacek Blazewicz; Marek Figlerowicz; Przemyslaw Jackowiak; Dariusz Janny; Dariusz Jarczynski; Marta Kasprzak; Maciej Nalewaj; Bartosz Nowierski; Rafal Styszynski; Lukasz Szajkowski; Pawel Widera (ENC, 2004)

Tabu search algorithm for DNA sequencing by hybridization with isothermic libraries. - Jacek Blazewicz; Piotr Formanowicz; Marta Kasprzak; Wojciech T. Markiewicz; Aleksandra Swiercz (Comput. Biol. Chem., 2004)

Sequencing by hybridization with isothermic oligonucleotide libraries. - Jacek Blazewicz; Piotr Formanowicz; Marta Kasprzak; Wojciech T. Markiewicz (Discret. Appl. Math., 2004)

DNA Sequencing - Tabu and Scatter Search Combined. - Jacek Blazewicz; Fred W. Glover; Marta Kasprzak (INFORMS J. Comput., 2004)

An Algorithm for an Automatic NOE Pathways Analysis of 2D NMR Spectra of RNA Duplexes. - Ryszard W. Adamiak; Jacek Blazewicz; Piotr Formanowicz; Zofia Gdaniec; Marta Kasprzak; Mariusz Popenda; Marta Szachniuk (J. Comput. Biol., 2004)

Evolutionary Approaches to DNA Sequencing with Errors. - Jacek Blazewicz; Fred W. Glover; Marta Kasprzak (Ann. Oper. Res., 2005)

Selected combinatorial problems of computational biology. - Jacek Blazewicz; Piotr Formanowicz; Marta Kasprzak (Eur. J. Oper. Res., 2005)

Combinatorial optimization in DNA mapping - a computational thread of the Simplified Partial Digest Problem. - Jacek Blazewicz; Marta Kasprzak (RAIRO Oper. Res., 2005)

On the complexity of the DNA Simplified Partial Digest Problem. - Jacek Blazewicz; Marta Kasprzak (CATS, 2006)

Dealing with repetitions in sequencing by hybridization. - Jacek Blazewicz; Fred W. Glover; Marta Kasprzak; Wojciech T. Markiewicz; Ceyda Oguz; Dietrich Rebholz-Schuhmann; Aleksandra Swiercz (Comput. Biol. Chem., 2006)

Computational complexity of isothermic DNA sequencing by hybridization. - Jacek Blazewicz; Marta Kasprzak (Discret. Appl. Math., 2006)

A polynomial time equivalence between DNA sequencing and the exact perfect matching problem. - Jacek Blazewicz; Piotr Formanowicz; Marta Kasprzak; Petra Schuurman; Gerhard J. Woeginger (Discret. Optim., 2007)

Simplified Partial Digest Problem: Enumerative and Dynamic Programming Algorithms. - Jacek Blazewicz; Edmund K. Burke; Marta Kasprzak; Alexandr Kovalev; Mikhail Y. Kovalyov (IEEE ACM Trans. Comput. Biol. Bioinform., 2007)

Parallel Implementation of the Novel Approach to Genome Assembly. - Jacek Blazewicz; Marta Kasprzak; Aleksandra Swiercz; Marek Figlerowicz; Piotr Gawron; Darren Platt; Lukasz Szajkowski (SNPD, 2008)

Finding Hamiltonian circuits in quasi-adjoint graphs. - Jacek Blazewicz; Marta Kasprzak; Benjamin Leroy-Beaulieu; Dominique de Werra (Discret. Appl. Math., 2008)

Whole genome assembly from 454 sequencing output via modified DNA graph concept. - Jacek Blazewicz; Marcin Bryja; Marek Figlerowicz; Piotr Gawron; Marta Kasprzak; Edward Kirton; Darren Platt; Jakub Przybytek; Aleksandra Swiercz; Lukasz Szajkowski (Comput. Biol. Chem., 2009)

On the approximability of the Simplified Partial Digest Problem. - Jacek Blazewicz; Edmund K. Burke; Marta Kasprzak; Alexandr Kovalev; Mikhail Y. Kovalyov (Discret. Appl. Math., 2009)

Highly Efficient Parallel Approach to the Next-Generation DNA Sequencing. - Jacek Blazewicz; Bartosz Bosak; Piotr Gawron; Marta Kasprzak; Krzysztof Kurowski; Tomasz Piontek; Aleksandra Swiercz (PPAM (2), 2011)

The simplified partial digest problem: Approximation and a graph-theoretic model. - Jacek Blazewicz; Edmund K. Burke; Marta Kasprzak; Alexandr Kovalev; Mikhail Y. Kovalyov (Eur. J. Oper. Res., 2011)

RNA Partial Degradation Problem: Motivation, Complexity, Algorithm. - Jacek Blazewicz; Marek Figlerowicz; Marta Kasprzak; Martyna Nowacka; Agnieszka Rybarczyk (J. Comput. Biol., 2011)

Reduced-by-matching Graphs: Toward Simplifying Hamiltonian Circuit Problem. - Jacek Blazewicz; Marta Kasprzak (Fundam. Informaticae, 2012)

Complexity Issues in Computational Biology. - Jacek Blazewicz; Marta Kasprzak (Fundam. Informaticae, 2012)

Structural alignment of protein descriptors - a combinatorial model. - Maciej Antczak; Marta Kasprzak; Piotr Lukasiak; Jacek Blazewicz (BMC Bioinform., 2016)

High-order statistical compressor for long-term storage of DNA sequencing data. - Marek Chlopkowski; Maciej Antczak; Michal Slusarczyk; Aleksander Wdowinski; Michal Zajaczkowski; Marta Kasprzak (RAIRO Oper. Res., 2016)

Tabu Search for the RNA Partial Degradation Problem. - Agnieszka Rybarczyk; Alain Hertz; Marta Kasprzak; Jacek Blazewicz (Int. J. Appl. Math. Comput. Sci., 2017)

Classification of de Bruijn-based labeled digraphs. - Marta Kasprzak (Discret. Appl. Math., 2018)

Graph algorithms for DNA sequencing - origins, current models and the future. - Jacek Blazewicz; Marta Kasprzak; Michal Kierzynka; Wojciech Frohmberg; Aleksandra Swiercz; Pawel Wojciechowski; Piotr Zurkowski (Eur. J. Oper. Res., 2018)

A Heuristic Approach to the Treedepth Decomposition Problem for Large Graphs. - Sylwester Swat; Marta Kasprzak (WG, 2021)

Genome-scale de novo assembly using ALGA. - Sylwester Swat; Artur Laskowski; Jan Badura; Wojciech Frohmberg; Pawel Wojciechowski; Aleksandra Swiercz; Marta Kasprzak; Jacek Blazewicz (Bioinform., 2021)

Assignment of tasks to machines under data replication with a tie to Steiner systems. - Pawel Wojciechowski; Marta Kasprzak (Int. J. Appl. Math. Comput. Sci., 2024)

Beyond Quasi-Adjoint Graphs: On Polynomial-Time Solvable Cases of the Hamiltonian Cycle and Path Problems. - Marta Kasprzak (Informatica, 2024)