Multiple haplotype reconstruction from allele frequency data. - Marta Pelizzola; Merle Behr; Housen Li; Axel Munk; Andreas Futschik (Nat. Comput. Sci., 2021)

Haplotype based testing for a better understanding of the selective architecture. - Haoyu Chen; Marta Pelizzola; Andreas Futschik (BMC Bioinform., 2023)

Model selection and robust inference of mutational signatures using Negative Binomial non-negative matrix factorization. - Marta Pelizzola; Ragnhild Laursen; Asger Hobolth (BMC Bioinform., 2023)

On the Relation Between Autoencoders and Non-negative Matrix Factorization, and Their Application for Mutational Signature Extraction. - Ida Egendal; Rasmus Froberg Brøndum; Marta Pelizzola; Asger Hobolth; Martin Bøgsted (CoRR, 2024)

On the Relation Between Linear Autoencoders and Non-Negative Matrix Factorization for Mutational Signature Extraction. - Ida Egendal; Rasmus Froberg Brøndum; Marta Pelizzola; Asger Hobolth; Martin Bøgsted (J. Comput. Biol., 2025)