Predicting Promoters in Phage Genomes Using Machine Learning Models. - Marta Sampaio; Miguel Rocha 001; Hugo Oliveira; Oscar Dias (PACBB, 2019)

Predicting promoters in phage genomes using PhagePromoter. - Marta Sampaio; Miguel Rocha 001; Hugo Oliveira; Oscar Dias (Bioinform., 2019)

Towards a Multivariate Analysis of Genome-Scale Metabolic Models Derived from the BiGG Models Database. - Alexandre Oliveira; Emanuel Cunha; Fernando Cruz; João Capela; João Carlos Sequeira; Marta Sampaio; Oscar Dias (PACBB, 2021)

Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool. - Alexandre Oliveira; Emanuel Cunha; Fernando Cruz; João Capela; João Carlos Sequeira; Marta Sampaio; Cláudia Sampaio; Oscar Dias (J. Integr. Bioinform., 2022)

A diel multi-tissue genome-scale metabolic model of Vitis vinifera. - Marta Sampaio; Miguel Rocha 001; Oscar Dias (PLoS Comput. Biol., 2024)

M3L: exploring synergies between metabolic modelling and machine learning for studying plants - Marta Sampaio (2024)