ChemGrapher: Optical Graph Recognition of Chemical Compounds by Deep Learning. - Martijn Oldenhof; Adam Arany; Yves Moreau; Jaak Simm (J. Chem. Inf. Model., 2020)

Self-labeling of Fully Mediating Representations by Graph Alignment. - Martijn Oldenhof; Adam Arany; Yves Moreau; Jaak Simm (BNAIC/BENELEARN, 2021)

SparseChem: Fast and accurate machine learning model for small molecules. - Adam Arany; Jaak Simm; Martijn Oldenhof; Yves Moreau (CoRR, 2022)

Industry-Scale Orchestrated Federated Learning for Drug Discovery. - Martijn Oldenhof; Gergely Ács; Balázs Pejó; Ansgar Schuffenhauer; Nicholas Holway; Noé Sturm; Arne Dieckmann; Oliver Fortmeier; Eric Boniface; Clément Mayer; Arnaud Gohier; Peter Schmidtke; et al. (CoRR, 2022)

Industry-Scale Orchestrated Federated Learning for Drug Discovery. - Martijn Oldenhof; Gergely Ács; Balázs Pejó; Ansgar Schuffenhauer; Nicholas Holway; Noé Sturm; Arne Dieckmann; Oliver Fortmeier; Eric Boniface; Clément Mayer; Arnaud Gohier; Peter Schmidtke; et al. (AAAI, 2023)

Weakly Supervised Knowledge Transfer with Probabilistic Logical Reasoning for Object Detection. - Martijn Oldenhof; Adam Arany; Yves Moreau; Edward De Brouwer (ICLR, 2023)

Atom-Level Optical Chemical Structure Recognition with Limited Supervision. - Martijn Oldenhof; Edward De Brouwer; Adam Arany; Yves Moreau (CVPR, 2024)

MELLODDY: Cross-pharma Federated Learning at Unprecedented Scale Unlocks Benefits in QSAR without Compromising Proprietary Information. - Wouter Heyndrickx; Lewis H. Mervin; Tobias Morawietz; Noé Sturm; Lukas Friedrich; Adam Zalewski; Anastasia Pentina; Lina Humbeck; Martijn Oldenhof; Ritsuya Niwayama; Peter Schmidtke; Nikolas Fechner; et al. (J. Chem. Inf. Model., 2024)

Personalized federated learning for predicting disability progression in multiple sclerosis using real-world routine clinical data. - Ashkan Pirmani; Edward De Brouwer; Adam Arany; Martijn Oldenhof; Antoine Passemiers; Axel Faes; Tomas Kalincik; Serkan Ozakbas; Riadh Gouider; Barbara Willekens; Dana Horáková; Eva Kubala Havrdova; et al. (npj Digit. Medicine, 2025)