OncoCase: Interdisciplinary Case Based Teaching in Neuro-Oncology Based on the Campus Platform. - Martin Boeker; Christine Müller; Rüdiger Klar; Johannes Lutterbach (AMIA, 2005)

The @neurIST Ontology of Intracranial Aneurysms: Providing Terminological Services for an Integrated IT Infrastructure. - Martin Boeker; Holger Stenzhorn; Kai Kumpf; Philippe Bijlenga; Stefan Schulz 001; Susanne Hanser (AMIA, 2007)

A Generic, Web-based Clinical Information System Architecture Using HL7 CDA: Successful Implementation in Dermatological Routine Care. - Thilo Schuler; Martin Boeker; Rüdiger Klar; Marcel Müller (MedInfo, 2007)

The ontology of biological taxa. - Stefan Schulz 001; Holger Stenzhorn; Martin Boeker (ISMB, 2008)

Post-Coordination in the Mapping of Interface Terms of a Clinical Wound Documentation System to SNOMED CT. - Martin Boeker; Stefan Schulz 001; Thilo Schuler (KR-MED, 2008)

How Granularity Issues Concern Biomedical Ontology Integration. - Stefan Schulz 001; Martin Boeker; Holger Stenzhorn (MIE, 2008)

Adapting Clinical Ontologies in Real-World Environments. - Holger Stenzhorn; Stefan Schulz 001; Martin Boeker; Barry Smith 001 (J. Univers. Comput. Sci., 2008)

SNOMED reaching its adolescence: Ontologists' and logicians' health check. - Stefan Schulz 001; Boontawee Suntisrivaraporn; Franz Baader; Martin Boeker (Int. J. Medical Informatics, 2009)

The DebugIT Core Ontology: semantic integration of antibiotics resistance patterns. - Daniel Schober; Martin Boeker; Jessica Bullenkamp; Csaba Huszka; Kristof Depraetere; Douglas Teodoro; Nadia Nadah; Rémy Choquet; Christel Daniel; Stefan Schulz 001 (MedInfo, 2010)

Developing DCO: The DebugIT core ontology for antibiotics resistence modelling. - Daniel Schober; Martin Boeker; Stefan Schulz 001; Ilinca Tudose (Semantic Mining in Biomedicine, 2010)

A T-Box Generator for Testing Scalability of OWL Mereotopological Patterns. - Martin Boeker; Janna Hastings; Daniel Schober; Stefan Schulz 001 (OWLED, 2011)

Scalable representations of diseases in biomedical ontologies. - Stefan Schulz 001; Kent A. Spackman; Andrew G. James; Cristian Cocos; Martin Boeker (J. Biomed. Semant., 2011)

Unintended consequences of existential quantifications in biomedical ontologies. - Martin Boeker; Ilinca Tudose; Janna Hastings; Daniel Schober; Stefan Schulz 001 (BMC Bioinform., 2011)

Teaching Good Biomedical Ontology Design. - Martin Boeker; Daniel Schober; Djamila Raufie; Niels Grewe; Johannes Röhl; Ludger Jansen; Stefan Schulz 001 (ICBO, 2012)

Checking Class Labels against Naming Conventions: First experiences with the OntoCheck Protégé plugin. - Daniel Schober; Vojtech Svátek; Martin Boeker (ICBO, 2012)

OntoCheck: verifying ontology naming conventions and metadata completeness in Protégé 4. - Daniel Schober; Ilinca Tudose; Vojtech Svátek; Martin Boeker (J. Biomed. Semant., 2012)

Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology. - Djamila Seddig-Raufie; Ludger Jansen; Daniel Schober; Martin Boeker; Niels Grewe; Stefan Schulz 001 (J. Biomed. Semant., 2012)

Usability-driven pruning of large ontologies: the case of SNOMED CT. - Pablo López-García; Martin Boeker; Arantza Illarramendi; Stefan Schulz 001 (J. Am. Medical Informatics Assoc., 2012)

Measuring the Effect of a Guideline-based Training on Ontology Design with a Competency Questions based Evaluation Approach. - Martin Boeker; Niels Grewe; Johannes Röhl; Daniel Schober; Stefan Schulz 001; Djamila Seddig-Raufie; Ludger Jansen (GI-Jahrestagung, 2013)

BioTopLite: An Upper Level Ontology for the Life SciencesEvolution, Design and Application. - Stefan Schulz 001; Martin Boeker (GI-Jahrestagung, 2013)

Time-dependent Migration of Citations Through PubMed and OvidSP Subsets: a Study on a Series of Simultaneous PubMed and OvidSP Searches. - Martin Boeker; Werner Vach; Edith Motschall (MedInfo, 2013)

Machine vs. Human Translation of SNOMED CT Terms. - Stefan Schulz 001; Johannes Bernhardt-Melischnig; Markus Kreuzthaler; Philipp Daumke; Martin Boeker (MedInfo, 2013)

Analysis and Visualization of Disease Courses in a Semantic Enabled Cancer Registry. - Angel Esteban-Gil; Jesualdo Tomás Fernández-Breis; Martin Boeker (SWAT4LS, 2014)

DebugIT: Ontology-mediated Layered Data Integration for Real-time Antibiotics Resistance Surveillance. - Daniel Schober; Rémy Choquet; Kristof Depraetere; Frank Enders; Philipp Daumke; Marie-Christine Jaulent; Douglas Teodoro; Emilie Pasche; Christian Lovis; Martin Boeker (SWAT4LS, 2014)

Validating archetypes for the Multiple Sclerosis Functional Composite. - Michael Braun; Alexander Ulrich Brandt; Stefan Schulz 001; Martin Boeker (BMC Medical Informatics Decis. Mak., 2014)

TNM-O an ontology for the Tumor-Node-Metastasis classification of malignant tumors: a study on rectal cancer. - Martin Boeker; Fábio França; Peter Bronsert; Stefan Schulz 001 (ICBO, 2015)

Feasibility of an ontology driven tumor-node-metastasis classifier application: A study on colorectal cancer. - Fábio França; Stefan Schulz 001; Peter Bronsert; Paulo Novais; Martin Boeker (INISTA, 2015)

TNM-O: ontology support for staging of malignant tumours. - Martin Boeker; Fábio França; Peter Bronsert; Stefan Schulz 001 (J. Biomed. Semant., 2016)

Pizza & Wine: The Need for Educational Tools for Foundational Ontologies. - Stefan Schulz 001; Martin Boeker; José Antonio Vera Ramos; Ludger Jansen (JOWO, 2017)

TNM-O: A Modular Ontological Approach for the Representation of Tumour Entities across TNM Versions. - Susanne Zabka; Stefan Schulz 001; Oliver Brunner; Martin Boeker (JOWO, 2017)

Analysis and visualization of disease courses in a semantically-enabled cancer registry. - Angel Esteban-Gil; Jesualdo Tomás Fernández-Breis; Martin Boeker (J. Biomed. Semant., 2017)

Integrating clinical decision support systems for pharmacogenomic testing into clinical routine - a scoping review of designs of user-system interactions in recent system development. - Marc Hinderer; Martin Boeker; Sebastian A. Wagner; Martin Lablans; Stephanie Newe; Jan L. Hülsemann; Michael Neumaier; Harald Binder; Harald Renz; Till Acker; Hans-Ulrich Prokosch; Martin Sedlmayr (BMC Medical Informatics Decis. Mak., 2017)

Implementing Pharmacogenomic Clinical Decision Support into German Hospitals. - Marc Hinderer; Melanie Boerries; Martin Boeker; Michael Neumaier; Frank-Peter Loubal; Till Acker; Manfred Brunner; Hans-Ulrich Prokosch; Jan Christoph (MIE, 2018)

Experiences from the National Demonstrator Study within the German Medical Informatics Initiative. - Thomas Ganslandt; Jannik Schaaf; Josef Schepers; Holger Storf; Felix Balzer; Silke Haferkamp; Robert Lodahl; Fabian Prasser; Ulrich Sax; Holger Stenzhorn; Hans-Ulrich Prokosch; Martin Boeker (AMIA, 2019)

Establishing an Interoperable Clinical Trial Information System Within MIRACUM. - Hanna Hasselblatt; Johanna Andrae; Adrian Tassoni; Kai Fitzer; Thomas Bahls; Hans-Ulrich Prokosch; Martin Boeker (EFMI-STC, 2019)

Ontology Patterns for Tubular or Spherical Layered Structures. A Case Study from Oncology. - Johannes Herrmann; Susanne Zabka; Martin Boeker; Stefan Schulz 001 (JOWO, 2019)

Towards a Medication Core Data Set for the Medical Informatics Initiative (MII): Initial Mapping Experience between the German Procedure Classification (OPS) and the Identification of Medicinal Products (IDMP). - Susanne Zabka; Danny Ammon; Thomas Ganslandt; Jan E. Gewehr; Christian Haverkamp; Saskia Kiefer; Heinrich Lautenbacher; Matthias Löbe; Sylvia Thun; Martin Boeker (JOWO, 2019)

Finding the Needle in the Hay Stack: An Open Architecture to Support Diagnosis of Undiagnosed Patients. - Jannik Schaaf; Martin Boeker; Thomas Ganslandt; Christian Haverkamp; Tim Hermann; Dennis Kadioglu; Hans-Ulrich Prokosch; Thomas O. F. Wagner; Michael von Wagner; Johanna Schaefer; Martin Sedlmayr; Holger Storf (MedInfo, 2019)

The Status Quo of Rare Diseases Centres for the Development of a Clinical Decision Support System - A Cross-Sectional Study. - Jannik Schaaf; Martin Sedlmayr; Hans-Ulrich Prokosch; Thomas Ganslandt; Carmen Schade-Brittinger; Michael von Wagner; Dennis Kadioglu; Katharina Schubert; Min Ae Lee-Kirsch; Bernhard K. Kraemer; Beate Winner; Tobias Mueller; et al. (dHealth, 2020)

Needs for an Integration of Specific Data Sources and Items - First Insights of a National Survey Within the German Center for Infection Research. - Carolin E. M. Jakob; Melanie Stecher; Sandra Fuhrmann; Sebastian Wingen-Heimann; Stephanie Heinen; Gabriele Anton; Michael Behnke; Uta Behrends; Martin Boeker; Stefanie Castell; Hans Demski; Maximilian Diefenbach; et al. (GMDS, 2020)

Fast Healthcare Interoperability Resources (FHIR®) Representation of Medication Data Derived from German Procedure Classification Codes (OPS) Using Identification of Medicinal Products (IDMP) Compliant Terminology. - Julian Sass; Susanne Zabka; Andrea Essenwanger; Josef Schepers; Martin Boeker; Sylvia Thun (GMDS, 2020)

Visualization of Similar Patients in a Clinical Decision Support System for Rare Diseases - A Focus Group Study. - Jannik Schaaf; Martin Sedlmayr; Hans-Ulrich Prokosch; Niels Tegtbauer; Dennis Kadioglu; Johanna Schaefer; Martin Boeker; Holger Storf (GMDS, 2020)

How versioning of terminology systems can be supported by ontological models - a case study on TNM tumor classification. - Susanne Zabka; Stefan Schulz 001; Oliver Brunner; Martin Boeker (Appl. Ontology, 2020)

GottBERT: a pure German Language Model. - Raphael Scheible; Fabian Thomczyk; Patric Tippmann; Victor Jaravine; Martin Boeker (CoRR, 2020)

Interviews with experts in rare diseases for the development of clinical decision support system software - a qualitative study. - Jannik Schaaf; Hans-Ulrich Prokosch; Martin Boeker; Johanna Schaefer; Jessica Vasseur; Holger Storf; Martin Sedlmayr (BMC Medical Informatics Decis. Mak., 2020)

International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium. - Gabriel A. Brat; Griffin M. Weber; Nils Gehlenborg; Paul Avillach; Nathan P. Palmer; Luca Chiovato; James J. Cimino; Lemuel R. Waitman; Gilbert S. Omenn; Alberto Malovini; Jason H. Moore; Brett K. Beaulieu-Jones; et al. (npj Digit. Medicine, 2020)

A Multilingual Browser Platform for Medical Subject Headings. - Raphael Scheible; Philip Strecker; Suhail Yazijy; Fabian Thomczyk; Ruslan Talpa; Andrea Puhl; Martin Boeker (ICIMTH, 2021)

AHD2FHIR: A Tool for Mapping of Natural Language Annotations to Fast Healthcare Interoperability Resources - A Technical Case Report. - Raphael Scheible; Deniz Çaliskan; Patrick Fischer; Fabian Thomczyk; Susanne Zabka; Henning Schneider; Martin Boeker; Stefan Schulz 001; Hans-Ulrich Prokosch; Christian Gulden (MedInfo, 2021)

Availability of Structured Data Elements in Electronic Health Records for Supporting Patient Recruitment in Clinical Trials. - Albert Vass; Ines Reinecke; Martin Boeker; Hans-Ulrich Prokosch; Christian Gulden (MedInfo, 2021)

Automatic Generation of German Translation Candidates for SNOMED CT Textual Descriptions. - Andrea Prunotto; Stefan Schulz 001; Martin Boeker (MIE, 2021)

Validation of an internationally derived patient severity phenotype to support COVID-19 analytics from electronic health record data. - Jeffrey G. Klann; Hossein Estiri; Griffin M. Weber; Bertrand Moal; Paul Avillach; Chuan Hong; Amelia L. M. Tan; Brett K. Beaulieu-Jones; Victor M. Castro; Thomas Maulhardt; Alon Geva; Alberto Malovini; et al. (J. Am. Medical Informatics Assoc., 2021)

Usability Evaluation of a Modern Multilingual MeSH Browser. - Philip Strecker; Martin Boeker; Simon Buechner; Raphael Scheible (ICIMTH, 2022)

Validation of Multiple Path Translation for SNOMED CT Localisation. - Stefan Schulz 001; Martin Boeker; Andrea Prunotto (MIE, 2022)

FHIR DataProvider for ReactAdmin: Leveraging User Interface Creation for Medical Web Applications. - Raphael Scheible; David Alkier; Justus Wendroth; Julian Mayer; Martin Boeker (ICIMTH, 2023)

Herding Cats in Pandemic Times - Towards Technological and Organizational Convergence of Heterogeneous Solutions for Investigating and Mastering the Pandemic in University Medical Centers. - Dagmar Krefting; Nico T. Mutters; Rüdiger Pryss; Martin Sedlmayr; Martin Boeker; Christoph Dieterich; Carolin Koll; Martina Mueller; Anna Slagman; Dagmar Waltemath; Antje Wulff; Sven Zenker (MedInfo, 2023)

Identifying Relevant FHIR Elements for Data Quality Assessment in the German Core Data Set. - Christian Draeger; Erik Tute; Carsten Oliver Schmidt; Dagmar Waltemath; Martin Boeker; Alfred Winter; Matthias Löbe (MIE, 2023)

Announcement of the German Medical Text Corpus Project (GeMTeX). - Frank A. Meineke; Luise Modersohn; Markus Loeffler; Martin Boeker (MIE, 2023)

Creation of a structured molecular genomics report for Germany as a local adaption of HL7's Genomic Reporting Implementation Guide. - Caroline Stellmach; Julian Sass; Bernd Auber; Martin Boeker; Thomas F. Wienker; Andrew J. Heidel; Manuela Benary; Simon Schumacher; Stephan Ossowski; Frederick Klauschen; Yvonne Möller; Rita Schmutzler; et al. (J. Am. Medical Informatics Assoc., 2023)

Representation of evidence-based clinical practice guideline recommendations on FHIR. - Gregor Lichtner; Brian S. Alper; Carlo Jurth; Claudia Spies; Martin Boeker; Joerg J. Meerpohl; Falk von Dincklage (J. Biomed. Informatics, 2023)

GottBERT: a pure German Language Model. - Raphael Scheible; Johann Frei; Fabian Thomczyk; Henry He; Patric Tippmann; Jochen Knaus; Victor Jaravine; Frank Kramer 001; Martin Boeker (EMNLP, 2024)

De-Identifying GRASCCO - A Pilot Study for the De-Identification of the German Medical Text Project (GeMTeX) Corpus. - Christina Lohr; Franz Matthies; Jakob Faller; Luise Modersohn; Andrea Riedel; Udo Hahn; Rebekka Kiser; Martin Boeker; Frank A. Meineke (GMDS, 2024)

Smart hospital: achieving interoperability and raw data collection from medical devices in clinical routine. - Eimo Martens; Hans-Ulrich Haase; Giulio Mastella; Andreas Henkel; Christoph Spinner; Franziska Hahn; Congyu Zou; Augusto Fava-Sanches; Julia Allescher; Daniel Heid; Elena Strauss; Melanie-Maria Maier; et al. (Frontiers Digit. Health, 2024)

GraSCCo_PHI - Graz Synthetic Clinical text Corpus with Protected Health Information Annotations. - Christina Lohr; Franz Matthies; Faller Jakob; Luise Modersohn; Andrea Riedel; Udo Hahn; Rebekka Kiser; Martin Boeker; Frank A. Meineke (Zenodo, 2024)

Large language models-enabled digital twins for precision medicine in rare gynecological tumors. - Jacqueline Lammert; Nicole Pfarr; Leonid Kuligin; Sonja Mathes; Tobias Dreyer; Luise Modersohn; Patrick Metzger; Dyke Ferber; Jakob Nikolas Kather; Daniel Truhn; Lisa Christine Adams; Keno K. Bressem; et al. (npj Digit. Medicine, 2025)