A Generalized Hidden Markov Model for the Recognition of Human Genes in DNA. - David Kulp; David Haussler; Martin G. Reese; Frank H. Eeckman (ISMB, 1996)

Improved Splice Site Detection in Genie. - Martin G. Reese; Frank H. Eeckman; David Kulp; David Haussler (J. Comput. Biol., 1997)

Interpolated markov chains for eukaryotic promoter recognition. - Uwe Ohler; Stefan Harbeck; Heinrich Niemann; Elmar Nöth; Martin G. Reese (Bioinform., 1999)

Application of a Time-delay Neural Network to Promoter Annotation in the Drosophila Melanogaster Genome. - Martin G. Reese (Comput. Chem., 2002)

Genome-Wide Analysis of Human Disease Alleles Reveals That Their Locations Are Correlated in Paralogous Proteins. - Mark Yandell; Barry Moore; Fidel Salas; Chris Mungall; Andrew MacBride; Charles White; Martin G. Reese (PLoS Comput. Biol., 2008)

The VAAST Variant Prioritizer (VVP): ultrafast, easy to use whole genome variant prioritization tool. - Steven Flygare; Edgar Javier Hernandez; Lon Phan; Barry Moore; Man Li; Anthony Fejes; Hao Hu; Karen Eilbeck; Chad D. Huff; Lynn Jorde; Martin G. Reese; Mark Yandell (BMC Bioinform., 2018)