Low barrier kinetics: Dependence on observables and free energy surface. - Hairong Ma; Martin Gruebele (J. Comput. Chem., 2006)

Solving the low dimensional Smoluchowski equation with a singular value basis set. - Gregory Scott; Martin Gruebele (J. Comput. Chem., 2010)

An in-silico human cell model reveals the influence of spatial organization on RNA splicing. - Zhaleh Ghaemi; Joseph R. Peterson; Martin Gruebele; Zaida Luthey-Schulten (PLoS Comput. Biol., 2020)

Rapid automated 3-D pose estimation of larval zebrafish using a physical model-trained neural network. - Aniket Ravan; Ruopei Feng; Martin Gruebele; Yann R. Chemla (PLoS Comput. Biol., 2023)