PathFinder: reconstruction and dynamic visualization of metabolic pathways. - Alexander Goesmann; Martin Haubrock; Folker Meyer; Jörn Kalinowski; Robert Giegerich (Bioinform., 2002)

TRANSFAC®: transcriptional regulation, from patterns to profiles. - V. Matys; Ellen Fricke; R. Geffers; Ellen Gößling; Martin Haubrock; Reinhard Hehl; Klaus Hornischer; Dagmar Karas; Alexander E. Kel; Olga V. Kel-Margoulis; Dorothee-U. Kloos; Sigrid Land; et al. (Nucleic Acids Res., 2003)

Deriving an ontology for human gene expression sources from the CYTOMER? database on human organs and cell types. - Holger Michael; Xin Chen; Ellen Fricke; Martin Haubrock; Remko Ricanek; Edgar Wingender (Silico Biol., 2004)

DEEP - A tool for differential expression effector prediction. - Jost Degenhardt; Martin Haubrock; Jürgen Dönitz; Edgar Wingender; Torsten Crass (Nucleic Acids Res., 2007)

Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network. - Jin Wang; Martin Haubrock; Kunming Cao; Xu Hua; Chenyu Zhang; Edgar Wingender; Jie Li (BMC Syst. Biol., 2011)

δ-TRIMAX: Extracting Triclusters and Analysing Coregulation in Time Series Gene Expression Data. - Anirban Bhar; Martin Haubrock; Anirban Mukhopadhyay 001; Ujjwal Maulik; Sanghamitra Bandyopadhyay; Edgar Wingender (WABI, 2012)

The architecture of the gene regulatory networks of different tissues. - Jie Li; Xu Hua; Martin Haubrock; Jin Wang; Edgar Wingender (Bioinform., 2012)

Coupled Mutation Finder: A new entropy-based method quantifying phylogenetic noise for the detection of compensatory mutations. - Mehmet Gültas; Martin Haubrock; Nesrin Tüysüz; Stephan Waack (BMC Bioinform., 2012)

Using potential master regulator sites and paralogous expansion to construct tissue-specific transcriptional networks. - Martin Haubrock; Jie Li; Edgar Wingender (BMC Syst. Biol., 2012)

Coexpression and coregulation analysis of time-series gene expression data in estrogen-induced breast cancer cell. - Anirban Bhar; Martin Haubrock; Anirban Mukhopadhyay 001; Ujjwal Maulik; Sanghamitra Bandyopadhyay; Edgar Wingender (Algorithms Mol. Biol., 2013)

Multiobjective triclustering of time-series transcriptome data reveals key genes of biological processes. - Anirban Bhar; Martin Haubrock; Anirban Mukhopadhyay 001; Edgar Wingender (BMC Bioinform., 2015)

TFClass: a classification of human transcription factors and their rodent orthologs. - Edgar Wingender; Torsten Schoeps; Martin Haubrock; Jürgen Dönitz (Nucleic Acids Res., 2015)

TFClass: expanding the classification of human transcription factors to their mammalian orthologs. - Edgar Wingender; Torsten Schoeps; Martin Haubrock; Mathias Krull; Jürgen Dönitz (Nucleic Acids Res., 2018)