Scatter correction in 3-D PET. - Martin J. Lercher; Klaus Wienhard (IEEE Trans. Medical Imaging, 1994)

Gene Expression, Gene Clusters, and Genomic Regionality in Rates of Evolution. - Martin J. Lercher; Laurence D. Hurst (German Conference on Bioinformatics, 2003)

Horizontal gene transfer depends on gene content of the host. - Csaba Pál; Balázs Papp; Martin J. Lercher (ECCB/JBI, 2005)

Understanding the Degradation of Hominid Gene Control. - Peter D. Keightley; Martin J. Lercher; Adam Eyre-Walker (PLoS Comput. Biol., 2006)

TreeSnatcher plus: capturing phylogenetic trees from images. - Thomas Laubach; Arndt von Haeseler; Martin J. Lercher (BMC Bioinform., 2012)

OGEE: an online gene essentiality database. - Wei-Hua Chen; Pablo Minguez; Martin J. Lercher; Peer Bork (Nucleic Acids Res., 2012)

EvolView, an online tool for visualizing, annotating and managing phylogenetic trees. - Huangkai Zhang; Shenghan Gao; Martin J. Lercher; Songnian Hu; Wei-Hua Chen (Nucleic Acids Res., 2012)

sybil - Efficient constraint-based modelling in R. - Gabriel Gelius-Dietrich; Abdelmoneim Amer Desouki; Claus Fritzemeier; Martin J. Lercher (BMC Syst. Biol., 2013)

CycleFreeFlux: efficient removal of thermodynamically infeasible loops from flux distributions. - Abdelmoneim Amer Desouki; Florian Jarre; Gabriel Gelius-Dietrich; Martin J. Lercher (Bioinform., 2015)

WhopGenome: high-speed access to whole-genome variation and sequence data in R. - Ulrich Wittelsbürger; Bastian Pfeifer; Martin J. Lercher (Bioinform., 2015)

Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees. - Zilong He; Huangkai Zhang; Shenghan Gao; Martin J. Lercher; Wei-Hua Chen; Songnian Hu (Nucleic Acids Res., 2016)

Improved Metabolic Models for E. coli and Mycoplasma genitalium from GlobalFit, an Algorithm That Simultaneously Matches Growth and Non-Growth Data Sets. - Daniel Hartleb; Florian Jarre; Martin J. Lercher (PLoS Comput. Biol., 2016)

Erroneous energy-generating cycles in published genome scale metabolic networks: Identification and removal. - Claus Fritzemeier; Daniel Hartleb; Balázs Szappanos; Balázs Papp; Martin J. Lercher (PLoS Comput. Biol., 2017)

BlockFeST: Bayesian calculation of region-specific FST to detect local adaptation. - Bastian Pfeifer; Martin J. Lercher (Bioinform., 2018)

MVP: a microbe-phage interaction database. - Na L. Gao; Chengwei Zhang; Zhanbing Zhang; Songnian Hu; Martin J. Lercher; Xing-Ming Zhao; Peer Bork; Zhi Liu; Wei-Hua Chen (Nucleic Acids Res., 2018)

Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees. - Balakrishnan Subramanian; Shenghan Gao; Martin J. Lercher; Songnian Hu; Wei-Hua Chen (Nucleic Acids Res., 2019)

Mathematical properties of optimal fluxes in cellular reaction networks at balanced growth. - Hugo Dourado; Wolfram Liebermeister; Oliver Ebenhöh; Martin J. Lercher (PLoS Comput. Biol., 2023)

Optimal density of bacterial cells. - Tin Yau Pang; Martin J. Lercher (PLoS Comput. Biol., 2023)

A multimodal Transformer Network for protein-small molecule interactions enhances predictions of kinase inhibition and enzyme-substrate relationships. - Alexander Kroll; Sahasra Ranjan; Martin J. Lercher (PLoS Comput. Biol., 2024)