Intensity-based registration algorithm for probabilistic images and its application for 2D to 3D image registration. - Torsten Rohlfing; Daniel B. Russakoff; Martin J. Murphy; Calvin R. Maurer Jr. (Image Processing, 2002)

Image-Guided Motion Adaptation in Radiotherapy. - Martin J. Murphy (ISBI, 2007)

Using Neural Networks to Predict Breathing Motion. - Martin J. Murphy (ICMLA, 2008)

Reconstruction of 4D deformed CT for moving anatomy. - Alen Docef; Martin J. Murphy (Int. J. Comput. Assist. Radiol. Surg., 2008)

SUPIR: Surface Uncertainty-Penalized, Non-rigid Image Registration for Pelvic CT Imaging. - Cheng Zhang; Gary E. Christensen; Sebastian Kurtek; Anuj Srivastava; Martin J. Murphy; Elisabeth Weiss; Er-Wei Bai; Jeffrey F. Williamson (WBIR, 2012)

Non-rigid Image Registration with Equally Weighted Assimilated Surface Constraint. - Cheng Zhang; Gary E. Christensen; Martin J. Murphy; Elisabeth Weiss; Jeffrey F. Williamson (WBIR, 2014)