jSquid: a Java applet for graphical on-line network exploration. - Martin Klammer; Sanjit Roopra; Erik L. L. Sonnhammer (Bioinform., 2008)

MetaTM - a consensus method for transmembrane protein topology prediction. - Martin Klammer; David N. Messina; Thomas Schmitt 003; Erik L. L. Sonnhammer (BMC Bioinform., 2009)

Identifying differentially regulated subnetworks from phosphoproteomic data. - Martin Klammer; Klaus Godl; Andreas Tebbe; Christoph Schaab (BMC Bioinform., 2010)

Novel bioinformatical and statistical methods for the analysis of mass spectrometry-based phosphoproteomic data (Neue bioinformatische und statistische Methoden für die Analyse von Massenspektrometrie-basierten phosphoproteomischen Daten) - Martin Klammer (2015)