Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species. - Oliver Keller; Florian Odronitz; Mario Stanke; Martin Kollmar; Stephan Waack (BMC Bioinform., 2008)

A novel hybrid gene prediction method employing protein multiple sequence alignments. - Oliver Keller; Martin Kollmar; Mario Stanke; Stephan Waack (Bioinform., 2011)

Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology. - Holger Pillmann; Klas Hatje; Florian Odronitz; Björn Hammesfahr; Martin Kollmar (BMC Bioinform., 2011)

ShereKhan - calculating exchange parameters in relaxation dispersion data from CPMG experiments. - Adam Mazur; Björn Hammesfahr; Christian Griesinger; Donghan Lee; Martin Kollmar (Bioinform., 2013)

Peakr: simulating solid-state NMR spectra of proteins. - Robert Schneider; Florian Odronitz; Björn Hammesfahr; Marcel Hellkamp; Martin Kollmar (Bioinform., 2013)

GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures. - Björn Hammesfahr; Florian Odronitz; Stefanie Mühlhausen; Stephan Waack; Martin Kollmar (BMC Bioinform., 2013)

WebScipio: reconstructing alternative splice variants of eukaryotic proteins. - Klas Hatje; Björn Hammesfahr; Martin Kollmar (Nucleic Acids Res., 2013)

Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches. - Sebastian Horwege; Sebastian Lindner 001; Marcus Boden; Klas Hatje; Martin Kollmar; Chris-André Leimeister; Burkhard Morgenstern (Nucleic Acids Res., 2014)

GenePainter v. 2.0 resolves the taxonomic distribution of intron positions. - Stefanie Mühlhausen; Marcel Hellkamp; Martin Kollmar (Bioinform., 2015)

Waggawagga: comparative visualization of coiled-coil predictions and detection of stable single α-helices (SAH domains). - Dominic Simm; Klas Hatje; Martin Kollmar (Bioinform., 2015)

diArk - the database for eukaryotic genome and transcriptome assemblies in 2014. - Martin Kollmar; Lotte Kollmar; Björn Hammesfahr; Dominic Simm (Nucleic Acids Res., 2015)