rapmad: Robust Analysis of Peptide Microarray Data. - Bernhard Y. Renard; Martin Löwer; Yvonne Kuhne; Ulf Reimer; Andree Rothermel; Özlem Türeci; John C. Castle; Ugur Sahin (BMC Bioinform., 2011)

Confidence-based Somatic Mutation Evaluation and Prioritization. - Martin Löwer; Bernhard Y. Renard; Jos de Graaf; Meike Wagner; Claudia Paret; Christoph Kneip; Özlem Türeci; Mustafa Diken; Cedrik M. Britten; Sebastian Kreiter; Michael Koslowski; John C. Castle; et al. (PLoS Comput. Biol., 2012)

Secure Genome Processing in Public Cloud and HPC Environments. - André Brinkmann; Jürgen Kaiser; Martin Löwer; Lars Nagel 001; Ugur Sahin; Tim Süß (IWSG, 2017)

ArtiFuse - computational validation of fusion gene detection tools without relying on simulated reads. - Patrick Sorn; Christoph Holtsträter; Martin Löwer; Ugur Sahin; David Weber (Bioinform., 2020)

Integrative analysis of structural variations using short-reads and linked-reads yields highly specific and sensitive predictions. - Riccha Sethi; Julia Becker; Jos de Graaf; Martin Löwer; Martin Suchan; Ugur Sahin; David Weber (PLoS Comput. Biol., 2020)

NeoFox: annotating neoantigen candidates with neoantigen features. - Franziska Lang; Pablo Riesgo-Ferreiro; Martin Löwer; Ugur Sahin; Barbara Schrörs (Bioinform., 2021)