Indexed counter languages. - Jürgen Duske; Martin Middendorf; Rainer Parchmann (RAIRO Theor. Informatics Appl., 1992)

Zur Komplexität von Einbettungsproblemen für Wortmengen. - Martin Middendorf (1992)

Minimum Broadcast Time is NP-Complete for 3-Regular Planar Graphs and Deadline 2. - Martin Middendorf (Inf. Process. Lett., 1993)

Problem Heaps and Their Evaluation. - Hartmut Schmeck; Heiko Schröder 001; Jørgen Staunstrup; Martin Middendorf (Parallel Process. Lett., 1993)

The Shortest Common Nonsubsequence Problem is NP-Complete. - Martin Middendorf (Theor. Comput. Sci., 1993)

On the Approximation of Finding Various Minimal, Maximal, and Consistent Sequences. - Martin Middendorf (ISAAC, 1994)

More on the Complexity of Common Superstring and Supersequence Problems. - Martin Middendorf (Theor. Comput. Sci., 1994)

Sparse Matrix Multiplication on a Reconfigurable Mesh. - Martin Middendorf; Hartmut Schmeck; G. Turner (Aust. Comput. J., 1995)

On Finding Minimal, Maximal, and Consistent Sequences over a Binary Alphabet. - Martin Middendorf (Theor. Comput. Sci., 1995)

Manhattan Channel Routing is NP-complete Under Truly Restricted Settings. - Martin Middendorf (Chic. J. Theor. Comput. Sci., 1996)

On Physical Mapping and the Consecutive Ones Property for Sparse Matrices. - Jonathan E. Atkins; Martin Middendorf (Discret. Appl. Math., 1996)

Maximal Common Subsequences and Minimal Common Supersequences. - Campbell Fraser; Robert W. Irving; Martin Middendorf (Inf. Comput., 1996)

Two-Dimensional Partitioning Problems. - Martin Middendorf (Theor. Comput. Sci., 1996)

On Optimal k-linear Scheduling of Tree-Like Graphs for LogP-Machines. - Wolf Zimmermann; Martin Middendorf; Welf Löwe (Euro-Par, 1998)

A Simulator for the Reconfigurable Mesh Architecture. - Carsten Steckel; Martin Middendorf; Hossam A. ElGindy; Hartmut Schmeck (IPPS/SPDP Workshops, 1998)

An Island Model Based Ant System with Lookahead for the Shortest Supersequence Problem. - René Michel; Martin Middendorf (PPSN, 1998)

Matrix Multiplication on Processor Arrays with Optical Buses. - Martin Middendorf; Hossam A. ElGindy (Informatica (Slovenia), 1998)

Shortest Common Superstrings and Scheduling with Coordinated Starting Times. - Martin Middendorf (Theor. Comput. Sci., 1998)

Bit Summation on the Reconfigurable Mesh. - Martin Middendorf (IPPS/SPDP Workshops, 1999)

Transversal Graphs for Partially Ordered Sets: Sequencing, Merging and Scheduling Problems. - Martin Middendorf; Vadim G. Timkovsky (J. Comb. Optim., 1999)

Scheduling Inverse Trees Under the Communication Model of the LogP-Machine. - Martin Middendorf; Welf Löwe; Wolf Zimmermann (Theor. Comput. Sci., 1999)

Multiplication of Matrices With Different Sparseness Properties on Dynamically Reconfigurable Meshes. - Martin Middendorf; Hartmut Schmeck; Heiko Schröder 001; Gavin Turner (VLSI Design, 1999)

An Ant Algorithm with a New Pheromone Evaluation Rule for Total Tardiness Problems. - Daniel Merkle; Martin Middendorf (EvoWorkshops, 2000)

Task Rearrangement on Partially Reconfigurable FPGAs with Restricted Buffer. - Hossam A. ElGindy; Martin Middendorf; Hartmut Schmeck; Bernd Schmidt 005 (FPL, 2000)

Ant Colony Optimization for Resource-Constrained Projet Scheduling. - Daniel Merkle; Martin Middendorf; Hartmut Schmeck (GECCO, 2000)

Information Exchange in Multi Colony Ant Algorithms. - Martin Middendorf; Frank Reischle; Hartmut Schmeck (IPDPS Workshops, 2000)

Bi-Criterion Optimization with Multi Colony Ant Algorithms. - Steffen Iredi; Daniel Merkle; Martin Middendorf (EMO, 2001)

Pheromone Modification Strategies for Ant Algorithms Applied to Dynamic TSP. - Michael Guntsch; Martin Middendorf (EvoWorkshops, 2001)

A New Approach to Solve Permutation Scheduling Problems with Ant Colony Optimization. - Daniel Merkle; Martin Middendorf (EvoWorkshops, 2001)

Fast ant colony optimization on reconfigurable processor arrays. - Daniel Merkle; Martin Middendorf (IPDPS, 2001)

Applying Population Based ACO to Dynamic Optimization Problems. - Michael Guntsch; Martin Middendorf (Ant Algorithms, 2002)

Modelling ACO: Composed Permutation Problems. - Daniel Merkle; Martin Middendorf (Ant Algorithms, 2002)

A Population Based Approach for ACO. - Michael Guntsch; Martin Middendorf (EvoWorkshops, 2002)

Ant Colony Optimization with the Relative Pheromone Evaluation Method. - Daniel Merkle; Martin Middendorf (EvoWorkshops, 2002)

Population based ant colony optimization on FPGA. - Michael Guntsch; Martin Middendorf; Bernd Scheuermann; Oliver Diessel; Hossam A. ElGindy; Hartmut Schmeck; Keith So (FPT, 2002)

Studies On The Dynamics Of Ant Colony Optimization Algorithms. - Daniel Merkle; Martin Middendorf (GECCO, 2002)

Modeling the Dynamics of Ant Colony Optimization. - Daniel Merkle; Martin Middendorf (Evol. Comput., 2002)

Fast Ant Colony Optimization on Runtime Reconfigurable Processor Arrays. - Daniel Merkle; Martin Middendorf (Genet. Program. Evolvable Mach., 2002)

Multi Colony Ant Algorithms. - Martin Middendorf; Frank Reischle; Hartmut Schmeck (J. Heuristics, 2002)

Width-restricted layering of acyclic digraphs with consideration of dummy nodes. - Jürgen Branke; Stefan Leppert; Martin Middendorf; Peter Eades (Inf. Process. Lett., 2002)

An Evolutionary Approach to Dynamic Task Scheduling on FPGAs with Restricted Buffer. - Martin Middendorf; Bernd Scheuermann; Hartmut Schmeck; Hossam A. ElGindy (J. Parallel Distributed Comput., 2002)

Guest editorial: special section on ant colony optimization. - Luca Maria Gambardella; Marco Dorigo; Martin Middendorf; Thomas Stützle (IEEE Trans. Evol. Comput., 2002)

Ant colony optimization for resource-constrained project scheduling. - Daniel Merkle; Martin Middendorf; Hartmut Schmeck (IEEE Trans. Evol. Comput., 2002)

A hierarchical particle swarm optimizer. - Stefan Janson; Martin Middendorf (IEEE Congress on Evolutionary Computation, 2003)

Solving Multi-criteria Optimization Problems with Population-Based ACO. - Michael Guntsch; Martin Middendorf (EMO, 2003)

Ant Colony Optimization with Global Pheromone Evaluation for Scheduling a Single Machine. - Daniel Merkle; Martin Middendorf (Appl. Intell., 2003)

On Enforced Convergence of ACO and its Implementation on the Reconfigurable Mesh Architecture Using Size Reduction Tasks. - Stefan Janson; Daniel Merkle; Martin Middendorf; Hossam A. ElGindy; Hartmut Schmeck (J. Supercomput., 2003)

Competition Controlled Pheromone Update for Ant Colony Optimization. - Daniel Merkle; Martin Middendorf (ANTS Workshop, 2004)

Time-Scattered Heuristic for the Hardware Implementation of Population-Based ACO. - Bernd Scheuermann; Michael Guntsch; Martin Middendorf; Hartmut Schmeck (ANTS Workshop, 2004)

Hyperreconfigurable Architectures as Flexible Control Systems. - Sebastian Lange; Martin Middendorf (ARCS Workshops, 2004)

A Hierarchical Particle Swarm Optimizer for Dynamic Optimization Problems. - Stefan Janson; Martin Middendorf (EvoWorkshops, 2004)

Hyperreconfigurable Architectures for Fast Run Time Reconfiguration. - Sebastian Lange; Martin Middendorf (FCCM, 2004)

The Partition into Hypercontexts Problem for Hyperreconfigurable Architectures. - Sebastian Lange; Martin Middendorf (FPL, 2004)

Models and Reconfiguration Problems for Multi Task Hyperreconfigurable Architectures. - Sebastian Lange; Martin Middendorf (IPDPS, 2004)

Decentralized Packet Clustering in Networks. - Daniel Merkle; Martin Middendorf; Alexander Scheidler (IPDPS, 2004)

Dynamic Polyethism and Competition for Tasks in Threshold Reinforcement Models of Social Insects. - Daniel Merkle; Martin Middendorf (Adapt. Behav., 2004)

FPGA implementation of population-based ant colony optimization. - Bernd Scheuermann; Keith So; Michael Guntsch; Martin Middendorf; Oliver Diessel; Hossam A. ElGindy; Hartmut Schmeck (Appl. Soft Comput., 2004)

Editorial. - Jens Gottlieb; Emma Hart; Martin Middendorf; Günther R. Raidl; Colin Reeves (J. Math. Model. Algorithms, 2004)

Combined super-/substring and super-/subsequence problems. - Martin Middendorf; David F. Manlove (Theor. Comput. Sci., 2004)

Dynamic Decentralized Packet Clustering in Networks. - Daniel Merkle; Martin Middendorf; Alexander Scheidler (EvoWorkshops, 2005)

Counter-Based Ant Colony Optimization as a Hardware-Oriented Meta-heuristic. - Bernd Scheuermann; Martin Middendorf (EvoWorkshops, 2005)

Heuristics for Context-Caches in 2-Level Reconfigurable Architectures. - Sebastian Lange; Martin Middendorf (FPT, 2005)

Modelling Ant Brood Tending Behavior with Cellular Automata. - Daniel Merkle; Martin Middendorf; Alexander Scheidler (International Conference on Computational Science (2), 2005)

Flexible Particle Swarm Optimization Tasks for Reconfigurable Processor Arrays. - Stefan Janson; Martin Middendorf (IPDPS, 2005)

A Parallel Algorithm for Solving the Reversal Median Problem. - Matthias Bernt; Daniel Merkle; Martin Middendorf (PPAM, 2005)

On the design of two-level reconfigurable architectures. - Sebastian Lange; Martin Middendorf (ReConFig, 2005)

Multi task hyperreconfigurable architectures: models and reconfiguration problems. - Sebastian Lange; Martin Middendorf (Int. J. Embed. Syst., 2005)

Decentralized packet clustering in router-based networks. - Daniel Merkle; Martin Middendorf; Alexander Scheidler (Int. J. Found. Comput. Sci., 2005)

On solving permutation scheduling problems with ant colony optimization. - Daniel Merkle; Martin Middendorf (Int. J. Syst. Sci., 2005)

Hyperreconfigurable architectures and the partition into hypercontexts problem. - Sebastian Lange; Martin Middendorf (J. Parallel Distributed Comput., 2005)

Reconstruction of the cophylogenetic history of related phylogenetic trees with divergence timing information. - Daniel Merkle; Martin Middendorf (Theory Biosci., 2005)

Waiting Strategies for Dynamic Vehicle Routing. - Jürgen Branke; Martin Middendorf; Guntram Noeth; Maged M. Dessouky (Transp. Sci., 2005)

A hierarchical particle swarm optimizer and its adaptive variant. - Stefan Janson; Martin Middendorf (IEEE Trans. Syst. Man Cybern. Part B, 2005)

The Reversal Median Problem, Common Intervals, and Mitochondrial Gene Orders. - Matthias Bernt; Daniel Merkle; Martin Middendorf (CompLife, 2006)

Cache Architectures for Reconfigurable Hardware. - Sebastian Lange; Martin Middendorf (ERSA, 2006)

Using Decentralized Clustering for Task Allocation in Networks with Reconfigurable Helper Units. - Daniel Merkle; Martin Middendorf; Alexander Scheidler (IWSOS/EuroNGI, 2006)

Hierarchical Cellular Genetic Algorithm. - Stefan Janson; Enrique Alba 001; Bernabé Dorronsoro; Martin Middendorf (EvoCOP, 2006)

Granularity aspects for the design of multi-level reconfigurable architectures. - Sebastian Lange; Martin Middendorf (FPT, 2006)

Self-organized task allocation for computing systems with reconfigurable components. - Daniel Merkle; Martin Middendorf; Alexander Scheidler (IPDPS, 2006)

Marco Dorigo and Thomas Stützle, Ant Colony Optimization, MIT Press (2004) ISBN 0-262-04219-3. - Daniel Merkle; Martin Middendorf (Eur. J. Oper. Res., 2006)

A hierarchical particle swarm optimizer for noisy and dynamic environments. - Stefan Janson; Martin Middendorf (Genet. Program. Evolvable Mach., 2006)

Modeling Ant Brood ending Patterns with Cellular Automata. - Daniel Merkle; Martin Middendorf; Alexander Scheidler (J. Cell. Autom., 2006)

Genome Rearrangement Based on Reversals that Preserve Conserved Intervals. - Matthias Bernt; Daniel Merkle; Martin Middendorf (IEEE ACM Trans. Comput. Biol. Bioinform., 2006)

An ant colony optimizer for melody creation with baroque harmony. - Michael Geis; Martin Middendorf (IEEE Congress on Evolutionary Computation, 2007)

A Fast and Exact Algorithm for the Perfect Reversal Median Problem. - Matthias Bernt; Daniel Merkle; Martin Middendorf (ISBRA, 2007)

A Particle Swarm Optimizer for Finding Minimum Free Energy RNA Secondary Structures. - Michael Geis; Martin Middendorf (SIS, 2007)

On Trajectories of Particles in PSO. - Stefan Janson; Martin Middendorf (SIS, 2007)

Swarm Controlled Emergence - Designing an Anti-Clustering Ant System. - Daniel Merkle; Martin Middendorf; Alexander Scheidler (SIS, 2007)

Using median sets for inferring phylogenetic trees. - Matthias Bernt; Daniel Merkle; Martin Middendorf (Bioinform., 2007)

CREx: inferring genomic rearrangements based on common intervals. - Matthias Bernt; Daniel Merkle; Kai Ramsch; Guido Fritzsch; Marleen Perseke; Detlef Bernhard; Martin Schlegel; Peter F. Stadler; Martin Middendorf (Bioinform., 2007)

Hardware-oriented ant colony optimization. - Bernd Scheuermann; Stefan Janson; Martin Middendorf (J. Syst. Archit., 2007)

Self-adaptive Worker-Helper Systems with Self-Organized Task Allocation. - Daniel Merkle; Martin Middendorf; Alexander Scheidler (Organic Computing, 2008)

Learning from House-Hunting Ants: Collective Decision-Making in Organic Computing Systems. - Arne Brutschy; Alexander Scheidler; Daniel Merkle; Martin Middendorf (ANTS Conference, 2008)

Emergent Sorting in Networks of Router Agents. - Alexander Scheidler; Christian Blum 001; Daniel Merkle; Martin Middendorf (ANTS Conference, 2008)

Evaluation of Ordering Methods for DNA Sequence Design Based on Ant Colony System. - Tri Basuki Kurniawan; Noor Khafifah Khalid; Zuwairie Ibrahim; Marzuki Khalid; Martin Middendorf (Asia International Conference on Modelling and Simulation, 2008)

Hyperreconfigurable architectures. - Sebastian Lange; Martin Middendorf (FPL, 2008)

Congestion Control in Ant Like Moving Agent Systems. - Alexander Scheidler; Daniel Merkle; Martin Middendorf (BICC, 2008)

An Algorithm for Inferring Mitogenome Rearrangements in a Phylogenetic Tree. - Matthias Bernt; Daniel Merkle; Martin Middendorf (RECOMB-CG, 2008)

Molecular docking with multi-objective Particle Swarm Optimization. - Stefan Janson; Daniel Merkle; Martin Middendorf (Appl. Soft Comput., 2008)

Creating melodies and baroque harmonies with ant colony optimization. - Michael Geis; Martin Middendorf (Int. J. Intell. Comput. Cybern., 2008)

A decentralization approach for swarm intelligence algorithms in networks applied to multi swarm PSO. - Stefan Janson; Daniel Merkle; Martin Middendorf (Int. J. Intell. Comput. Cybern., 2008)

Self-Organized Task Allocation for Service Tasks in Computing Systems with Reconfigurable Components. - Daniel Merkle; Martin Middendorf; Alexander Scheidler (J. Math. Model. Algorithms, 2008)

Swarm intelligence and signal processing [DSP Exploratory]. - Daniel Merkle; Martin Middendorf (IEEE Signal Process. Mag., 2008)

Solving the Preserving Reversal Median Problem. - Matthias Bernt; Daniel Merkle; Martin Middendorf (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

Editorial. - Jürgen Jost; Dirk Helbing; András Lörincz; Martin Middendorf (Theory Biosci., 2008)

Stability and performance of ant queue inspired task partitioning methods. - Alexander Scheidler; Daniel Merkle; Martin Middendorf (Theory Biosci., 2008)

Design Aspects of Multi-level Reconfigurable Architectures. - Sebastian Lange; Martin Middendorf (J. Signal Process. Syst., 2008)

Organic Computing and Swarm Intelligence. - Daniel Merkle; Martin Middendorf; Alexander Scheidler (Swarm Intelligence, 2008)

Finding All Sorting Tandem Duplication Random Loss Operations. - Matthias Bernt; Ming-Chiang Chen; Daniel Merkle; Hung-Lung Wang; Kun-Mao Chao; Martin Middendorf (CPM, 2009)

09041 Working Group on EMO for Robust Multiobjective Optimization (1st Round). - Jörg Fliege; Nicola Beume; Jürgen Branke; Heinrich Braun; Nirupam Chakraborti; Kalyanmoy Deb; Sabine Helwig; Joshua D. Knowles; Martin Middendorf; Sanaz Mostaghim; Silvia Poles; Daniel E. Salazar Aponte; et al. (Hybrid and Robust Approaches to Multiobjective Optimization, 2009)

Evolved cooperation and emergent communication structures in learning classifier based organic computing systems. - Alexander Scheidler; Martin Middendorf (GECCO (Companion), 2009)

On the Design of RNA Sequences for Realizing Extended Shapes. - Marc Hellmuth; Daniel Merkle; Martin Middendorf (IJCBS, 2009)

Self-synchronized duty-cycling for mobile sensor networks with energy harvesting capabilities: A swarm intelligence study. - Hugo Hernández; Christian Blum 001; Martin Middendorf; Kai Ramsch; Alexander Scheidler (SIS, 2009)

Adapting to Dynamic Environments: Polyethism in Response Threshold Models for Social Insects. - Konrad Diwold; Daniel Merkle; Martin Middendorf (Adv. Complex Syst., 2009)

Extended shapes for the combinatorial design of RNA sequences. - Marc Hellmuth; Daniel Merkle; Martin Middendorf (Int. J. Comput. Biol. Drug Des., 2009)

Editorial Special Issue: Swarm Intelligence. - Andries P. Engelbrecht; Xiaodong Li 001; Martin Middendorf; Luca Maria Gambardella (IEEE Trans. Evol. Comput., 2009)

Models and Algorithms for Hyperreconfigurable Hardware. - Sebastian Lange; Martin Middendorf (Dynamically Reconfigurable Systems, 2010)

Bee Nest Site Selection as an Optimization Process. - Konrad Diwold; Madeleine Beekman; Martin Middendorf (ALIFE, 2010)

Sensor Placement in Water Networks Using a Population-Based Ant Colony Optimization Algorithm. - Konrad Diwold; Thomas Ruhnke; Martin Middendorf (ICCCI (3), 2010)

Artificial Bee Colony Optimization: A New Selection Scheme and Its Performance. - Andrej Aderhold; Konrad Diwold; Alexander Scheidler; Martin Middendorf (NICSO, 2010)

A parameter-adaptive dynamic programming approach for inferring cophylogenies. - Daniel Merkle; Martin Middendorf; Nicolas Wieseke (BMC Bioinform., 2010)

Multi-level reconfigurable architectures in the switch model. - Sebastian Lange; Martin Middendorf (J. Syst. Archit., 2010)

Ant Inspired Methods for Organic Computing. - Alexander Scheidler; Arne Brutschy; Konrad Diwold; Daniel Merkle; Martin Middendorf (Organic Computing, 2011)

Quick-ACO: Accelerating Ant Decisions and Pheromone Updates in ACO. - Wei Cheng; Bernd Scheuermann; Martin Middendorf (EvoCOP, 2011)

Bonding as a swarm: applying bee nest-site selection behaviour to protein docking. - Konrad Diwold; Daniel Himmelbach; René Meier 002; Carsten Baldauf; Martin Middendorf (GECCO, 2011)

Trophallaxis-inspired self-organized task exchange in heterogeneous swarms. - Ruby L. V. Moritz; Kai Ramsch; Martin Middendorf (SWIS, 2011)

A method for computing an inventory of metazoan mitochondrial gene order rearrangements. - Matthias Bernt; Martin Middendorf (BMC Bioinform., 2011)

Learning classifier systems to evolve classification rules for systems of memory constrained components. - Alexander Scheidler; Martin Middendorf (Evol. Intell., 2011)

Particle swarm optimization for finding RNA secondary structures. - Michael Geis; Martin Middendorf (Int. J. Intell. Comput. Cybern., 2011)

Finding all sorting tandem duplication random loss operations. - Matthias Bernt; Kuan-Yu Chen 002; Ming-Chiang Chen; An-Chiang Chu; Daniel Merkle; Hung-Lung Wang; Kun-Mao Chao; Martin Middendorf (J. Discrete Algorithms, 2011)

Performance evaluation of artificial bee colony optimization and new selection schemes. - Konrad Diwold; Andrej Aderhold; Alexander Scheidler; Martin Middendorf (Memetic Comput., 2011)

Deciding on the wing: in-flight decision making and search space sampling in the red dwarf honeybee Apis florea. - Konrad Diwold; Timothy M. Schaerf; Mary R. Myerscough; Martin Middendorf; Madeleine Beekman (Swarm Intell., 2011)

Annotation guided local similarity search in multiple sequences and its application to mitochondrial genomes. - Ruby L. V. Moritz; Matthias Bernt; Martin Middendorf (BIBE, 2012)

Preserving Inversion Phylogeny Reconstruction. - Matthias Bernt; Kun-Mao Chao; Jyun-Wei Kao; Martin Middendorf; Eric Tannier (WABI, 2012)

On Weighting Schemes for Gene Order Analysis. - Matthias Bernt; Nicolas Wieseke; Martin Middendorf (GCB, 2013)

Refined ranking relations for multi objective optimization andapplication to P-ACO. - Ruby L. V. Moritz; Enrico Reich; Maik Schwarz; Matthias Bernt; Martin Middendorf (GECCO, 2013)

Self-adaptable Group Formation of Reconfigurable Agents in Dynamic Environments. - Ruby L. V. Moritz; Martin Middendorf (NICSO, 2013)

A common interval guided ACO algorithm for permutation problems. - Martin Clauß; Matthias Bernt; Martin Middendorf (SIS, 2013)

Simple probabilistic population based optimization for combinatorial optimization. - Ying-Chi Lin 001; Martin Middendorf (SIS, 2013)

Self-organized cooperation between agents that have to solve resource collection tasks. - Ruby L. V. Moritz; Martin Middendorf (SIS, 2013)

Unifying Parsimonious Tree Reconciliation. - Nicolas Wieseke; Matthias Bernt; Martin Middendorf (WABI, 2013)

dPSO-Vis: Topology-based Visualization of Discrete Particle Swarm Optimization. - Sebastian Volke; Martin Middendorf; Mario Hlawitschka; Jens Kasten; Dirk Zeckzer; Gerik Scheuermann (Comput. Graph. Forum, 2013)

Swarm controlled emergence for ant clustering. - Alexander Scheidler; Daniel Merkle; Martin Middendorf (Int. J. Intell. Comput. Cybern., 2013)

The Influence of Correlated Objectives on Different Types of P-ACO Algorithms. - Ruby L. V. Moritz; Enrico Reich; Matthias Bernt; Martin Middendorf (EvoCOP, 2014)

Comparing the Optimization Behaviour of Heuristics with Topology Based Visualization. - Simon Bin; Sebastian Volke; Gerik Scheuermann; Martin Middendorf (TPNC, 2014)

Challenges in RNA virus bioinformatics. - Manja Marz; Niko Beerenwinkel; Christian Drosten; Markus Fricke; Dmitrij Frishman; Ivo L. Hofacker; Dieter Hoffmann; Martin Middendorf; Thomas Rattei; Peter F. Stadler; Armin Töpfer (Bioinform., 2014)

Evolutionary Inheritance Mechanisms for Multi-criteriaDecision Making in Multi-agent Systems. - Ruby L. V. Moritz; Martin Middendorf (GECCO, 2015)

A Visual Method for Analysis and Comparison of Search Landscapes. - Sebastian Volke; Dirk Zeckzer; Gerik Scheuermann; Martin Middendorf (GECCO, 2015)

Refined ranking relations for selection of solutions in multi objective metaheuristics. - Ruby L. V. Moritz; Enrico Reich; Maik Schwarz; Matthias Bernt; Martin Middendorf (Eur. J. Oper. Res., 2015)

Task allocation in organic computing systems: networks with reconfigurable helper units. - Daniel Merkle; Martin Middendorf; Alexander Scheidler (Int. J. Auton. Adapt. Commun. Syst., 2015)

Decentralized and dynamic group formation of reconfigurable agents. - Ruby L. V. Moritz; Martin Middendorf (Memetic Comput., 2015)

Cophylogenetic Reconciliation with ILP. - Nicolas Wieseke; Tom Hartmann; Matthias Bernt; Martin Middendorf (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

A Property Preserving Method for Extending a Single-Objective Problem Instance to Multiple Objectives with Specific Correlations. - Ruby L. V. Moritz; Enrico Reich; Matthias Bernt; Martin Middendorf (EvoCOP, 2016)

Population based ant colony optimization for reconstructing ECG signals. - Yih-Chun Cheng; Tom Hartmann; Pei-Yun Tsai 001; Martin Middendorf (Evol. Intell., 2016)

A Population Based ACO Algorithm for the Combined Tours TSP Problem. - Martin Clauß; Lydia Lotzmann; Martin Middendorf (EAI Endorsed Trans. Self Adapt. Syst., 2016)

Simple Probabilistic Population-Based Optimization. - Ying-Chi Lin 001; Martin Clauß; Martin Middendorf (IEEE Trans. Evol. Comput., 2016)

Phylogenomics with Paralogs. - Marc Hellmuth; Nicolas Wieseke; Marcus Lechner; Hans-Peter Lenhof; Martin Middendorf; Peter F. Stadler (CoRR, 2017)

EqualTDRL: illustrating equivalent tandem duplication random loss rearrangements. - Tom Hartmann; Matthias Bernt; Martin Middendorf (BMC Bioinform., 2018)

Combinatorics of Tandem Duplication Random Loss Mutations on Circular Genomes. - Tom Hartmann; An-Chiang Chu; Martin Middendorf; Matthias Bernt (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Genome Rearrangement with ILP. - Tom Hartmann; Nicolas Wieseke; Roded Sharan; Martin Middendorf; Matthias Bernt (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

An Iterated Local Search Algorithm for the Two-Machine Flow Shop Problem with Buffers and Constant Processing Times on One Machine. - Hoang Thanh Le 002; Philine Geser; Martin Middendorf (EvoCOP, 2019)

An Exact Algorithm for Sorting by Weighted Preserving Genome Rearrangements. - Tom Hartmann; Matthias Bernt; Martin Middendorf (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

A weighted population update rule for PACO applied to the single machine total weighted tardiness problem. - Daniel Abitz; Tom Hartmann; Martin Middendorf (GECCO, 2020)

A Hybrid Swarm Intelligence Algorithm for Vehicle Routing Problem With Time Windows. - Yang Shen; Mingde Liu; Jian Yang 031; Yuhui Shi 001; Martin Middendorf (IEEE Access, 2020)

An Improvement Heuristic Based on Variable Neighborhood Search for a Dynamic Orienteering Problem. - Hoang Thanh Le 002; Martin Middendorf; Yuhui Shi 001 (EvoCOP, 2021)

A Hierarchical Simple Probabilistic Population-Based Algorithm Applied to the Dynamic TSP. - Edward Kupfer; Hoang Thanh Le 002; Johanna Zitt; Ying-Chi Lin 001; Martin Middendorf (SSCI, 2021)

Iterated Local Search and Other Algorithms for Buffered Two-Machine Permutation Flow Shops with Constant Processing Times on One Machine. - Hoang Thanh Le 002; Philine Geser; Martin Middendorf (Evol. Comput., 2021)

Sorting Signed Permutations by Inverse Tandem Duplication Random Losses. - Tom Hartmann; Max Bannach; Martin Middendorf (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Complete edge-colored permutation graphs. - Tom Hartmann; Max Bannach; Martin Middendorf; Peter F. Stadler; Nicolas Wieseke; Marc Hellmuth (Adv. Appl. Math., 2022)

On permutation schedules for two-machine flow shops with buffer constraints and constant processing times on one machine. - Philine Geser; Hoang Thanh Le 002; Tom Hartmann; Martin Middendorf (Eur. J. Oper. Res., 2022)

An Improvement Heuristic Based on Variable Neighborhood Search for Dynamic Orienteering Problems with Changing Node Values and Changing Budgets. - Hoang Thanh Le 002; Martin Middendorf; Yuhui Shi 001 (SN Comput. Sci., 2022)

Evolutionary Dynamic Multiobjective Optimization via Learning From Historical Search Process. - Qi Zhao; Bai Yan; Yuhui Shi 001; Martin Middendorf (IEEE Trans. Cybern., 2022)

XF-OPT/META: A Hyperparameter Optimization Framework Applied to the H -SPPBO Metaheuristic for the Dynamic TSP. - Daniel Werner; Fatma Turna; Hoang Thanh Le 002; Martin Middendorf (SSCI, 2023)

Detecting gene breakpoints in noisy genome sequences using position-annotated colored de-Bruijn graphs. - Lisa Fiedler; Matthias Bernt; Martin Middendorf; Peter F. Stadler (BMC Bioinform., 2023)