TaxMan: a taxonomic database manager. - Martin O. Jones; Mark L. Blaxter (BMC Bioinform., 2006)

iPhy: an integrated phylogenetic workbench for supermatrix analyses. - Martin O. Jones; Georgios D. Koutsovoulos; Mark L. Blaxter (BMC Bioinform., 2011)

Badger - an accessible genome exploration environment. - Ben Elsworth; Martin O. Jones; Mark L. Blaxter (Bioinform., 2013)

afterParty: turning raw transcriptomes into permanent resources. - Martin O. Jones; Mark L. Blaxter (BMC Bioinform., 2013)