A new paradigm for general architecture routing. - Martin Paluszewski; Pawel Winter; Martin Zachariasen (ACM Great Lakes Symposium on VLSI, 2004)

Reconstructing protein structure from solvent exposure using tabu search. - Martin Paluszewski; Thomas Hamelryck; Pawel Winter (Algorithms Mol. Biol., 2006)

Protein Decoy Generation Using Branch and Bound with Efficient Bounding. - Martin Paluszewski; Pawel Winter (WABI, 2008)

Beyond rotamers: a generative, probabilistic model of side chains in proteins. - Tim Harder; Wouter Boomsma; Martin Paluszewski; Jes Frellsen; Kristoffer E. Johansson; Thomas Hamelryck (BMC Bioinform., 2010)

Mocapy++ - A toolkit for inference and learning in dynamic Bayesian networks. - Martin Paluszewski; Thomas Hamelryck (BMC Bioinform., 2010)

Protein Structure Prediction Using Bee Colony Optimization Metaheuristic. - Rasmus Fonseca; Martin Paluszewski; Pawel Winter (J. Math. Model. Algorithms, 2010)