STI-GMaS: an open-source environment for simulation of sexually-transmitted infections. - Martin R. Nelson; Kelly J. Sutton; Bindi S. Brook; Dann G. Mallet; Daniel P. Simpson; Roger G. Rank (BMC Syst. Biol., 2014)

Modelling the impact of structural directionality on connectome-based models of neural activity. - Amelia Padmore; Martin R. Nelson; Nadia Chuzhanova; Jonathan J. Crofts (J. Complex Networks, 2020)

Spatial considerations in the resolution of inflammation: Elucidating leukocyte interactions via an experimentally-calibrated agent-based model. - Anahita Bayani; Joanne L. Dunster; Jonathan J. Crofts; Martin R. Nelson (PLoS Comput. Biol., 2020)

Analyzing Pattern Formation in the Gray-Scott Model: An XPPAUT Tutorial. - Demi L. Gandy; Martin R. Nelson (SIAM Rev., 2022)