A Navigation Platform for Guidance of Beating Heart Transapical Mitral Valve Repair. - John Moore 001; Chris Wedlake; Daniel Bainbridge; Gerard Guiraudon; Michael W. A. Chu; Bob Kiaii; Pencilla Lang; Martin Rajchl; Terry M. Peters (IPCAI, 2012)

Fast interactive multi-region cardiac segmentation with linearly ordered labels. - Martin Rajchl; Jing Yuan 001; Eranga Ukwatta; Terry M. Peters (ISBI, 2012)

Generation of Synthetic 4D Cardiac CT Images by Deformation from Cardiac Ultrasound. - Feng Li; James A. White; Martin Rajchl; Aashish Goela; Terry M. Peters (AE-CAI, 2012)

A Fast Convex Optimization Approach to Segmenting 3D Scar Tissue from Delayed-Enhancement Cardiac MR Images. - Martin Rajchl; Jing Yuan 001; James A. White; Cyrus M. S. Nambakhsh; Eranga Ukwatta; Feng Li; John Stirrat; Terry M. Peters (MICCAI (1), 2012)

Efficient Global Optimization Based 3D Carotid AB-LIB MRI Segmentation by Simultaneously Evolving Coupled Surfaces. - Eranga Ukwatta; Jing Yuan 001; Martin Rajchl; Aaron Fenster (MICCAI (3), 2012)

Feature identification for image-guided transcatheter aortic valve implantation. - Pencilla Lang; Martin Rajchl; A. Jonathan McLeod; Michael W. A. Chu; Terry M. Peters (Image-Guided Procedures, 2012)

Towards real-time 3D US-CT registration on the beating heart for guidance of minimally invasive cardiac interventions. - Feng Li; Pencilla Lang; Martin Rajchl; Elvis C. S. Chen; Gerard Guiraudon; Terry M. Peters (Image-Guided Procedures, 2012)

Real-time segmentation in 4D ultrasound with continuous max-flow. - Martin Rajchl; Jing Yuan 001; Terry M. Peters (Image Processing, 2012)

Efficient 3D Endfiring TRUS Prostate Segmentation with Globally Optimized Rotational Symmetry. - Jing Yuan 001; Wu Qiu; Martin Rajchl; Eranga Ukwatta; Xue-Cheng Tai; Aaron Fenster (CVPR, 2013)

Jointly Segmenting Prostate Zones in 3D MRIs by Globally Optimized Coupled Level-Sets. - Jing Yuan 001; Eranga Ukwatta; Wu Qiu; Martin Rajchl; Yue Sun; Xue-Cheng Tai; Aaron Fenster (EMMCVPR, 2013)

Generation of Synthetic 4D Cardiac CT Images for Guidance of Minimally Invasive Beating Heart Interventions. - Feng Li; Martin Rajchl; James A. White; Aashish Goela; Terry M. Peters (IPCAI, 2013)

Efficient 3D Multi-region Prostate MRI Segmentation Using Dual Optimization. - Wu Qiu; Jing Yuan 001; Eranga Ukwatta; Yue Sun; Martin Rajchl; Aaron Fenster (IPMI, 2013)

Towards CT Enhanced Ultrasound Guidance for Off-pump Beating Heart Mitral Valve Repair. - Feng P. Li; Martin Rajchl; James A. White; Aashish Goela; Terry M. Peters (AE-CAI, 2013)

Fast Globally Optimal Segmentation of 3D Prostate MRI with Axial Symmetry Prior. - Wu Qiu; Jing Yuan 001; Eranga Ukwatta; Yue Sun; Martin Rajchl; Aaron Fenster (MICCAI (2), 2013)

Efficient Convex Optimization Approach to 3D Non-rigid MR-TRUS Registration. - Yue Sun; Jing Yuan 001; Martin Rajchl; Wu Qiu; Cesare Romagnoli; Aaron Fenster (MICCAI (1), 2013)

Joint Segmentation of 3D Femoral Lumen and Outer Wall Surfaces from MR Images. - Eranga Ukwatta; Jing Yuan 001; Wu Qiu; Martin Rajchl; Bernard Chiu; Shadi Shavakh; Jianrong Xu; Aaron Fenster (MICCAI (1), 2013)

Efficient convex optimization-based curvature dependent contour evolution approach for medical image segmentation. - Eranga Ukwatta; Jing Yuan 001; Wu Qiu; Martin Rajchl; Aaron Fenster (Image Processing, 2013)

Left ventricle segmentation in MRI via convex relaxed distribution matching. - Cyrus M. S. Nambakhsh; Jing Yuan 001; Kumaradevan Punithakumar; Aashish Goela; Martin Rajchl; Terry M. Peters; Ismail Ben Ayed (Medical Image Anal., 2013)

A Navigation Platform for Guidance of Beating Heart Transapical Mitral Valve Repair. - John T. Moore; Michael W. A. Chu; Bob Kiaii; Daniel Bainbridge; Gerard Guiraudon; Chris Wedlake; Maria Currie; Martin Rajchl; Rajni V. Patel; Terry M. Peters (IEEE Trans. Biomed. Eng., 2013)

3-D Carotid Multi-Region MRI Segmentation by Globally Optimal Evolution of Coupled Surfaces. - Eranga Ukwatta; Jing Yuan 001; Martin Rajchl; Wu Qiu; David Tessier; Aaron Fenster (IEEE Trans. Medical Imaging, 2013)

Variational Time-Implicit Multiphase Level-Sets - A Fast Convex Optimization-Based Solution. - Martin Rajchl; John S. H. Baxter; Egil Bae; Xue-Cheng Tai; Aaron Fenster; Terry M. Peters; Jing Yuan 001 (EMMCVPR, 2014)

3D Prostate TRUS Segmentation Using Globally Optimized Volume-Preserving Prior. - Wu Qiu; Martin Rajchl; Fumin Guo; Yue Sun; Eranga Ukwatta; Aaron Fenster; Jing Yuan 001 (MICCAI (1), 2014)

Cerebral Ventricle Segmentation from 3D Pre-term IVH Neonate MR Images Using Atlas-Based Convex Optimization. - Wu Qiu; Jing Yuan 001; Martin Rajchl; Jessica Kishimoto; Eranga Ukwatta; Sandrine de Ribaupierre; Aaron Fenster (CARE@MICCAI, 2014)

Patient-specific left atrial wall-thickness measurement and visualization for radiofrequency ablation. - Jiro Inoue; Allan C. Skanes; James A. White; Martin Rajchl; Maria Drangova (Image-Guided Procedures, 2014)

Ultrasound based mitral valve annulus tracking for off-pump beating heart mitral valve repair. - Feng P. Li; Martin Rajchl; John Moore 001; Terry M. Peters (Image-Guided Procedures, 2014)

Distribution of guidance models for cardiac resynchronization therapy in the setting of multi-center clinical trials. - Martin Rajchl; Kamyar Abhari; John Stirrat; Eranga Ukwatta; Diego Cantor; Feng P. Li; Terry M. Peters; James A. White (Image-Guided Procedures, 2014)

Smoothness parameter tuning for generalized hierarchical continuous max-flow segmentation. - John S. H. Baxter; Martin Rajchl; A. Jonathan McLeod; Ali R. Khan; Jing Yuan 001; Terry M. Peters (Image Processing, 2014)

A Continuous Max-Flow Approach to General Hierarchical Multi-Labelling Problems. - John S. H. Baxter; Martin Rajchl; Jing Yuan 001; Terry M. Peters (CoRR, 2014)

A Continuous Max-Flow Approach to Multi-Labeling Problems under Arbitrary Region Regularization. - John S. H. Baxter; Martin Rajchl; Jing Yuan 001; Terry M. Peters (CoRR, 2014)

RANCOR: Non-Linear Image Registration with Total Variation Regularization. - Martin Rajchl; John S. H. Baxter; Wu Qiu; Ali R. Khan; Aaron Fenster; Terry M. Peters; Jing Yuan 001 (CoRR, 2014)

Dual optimization based prostate zonal segmentation in 3D MR images. - Wu Qiu; Jing Yuan 001; Eranga Ukwatta; Yue Sun; Martin Rajchl; Aaron Fenster (Medical Image Anal., 2014)

Prostate Segmentation: An Efficient Convex Optimization Approach With Axial Symmetry Using 3-D TRUS and MR Images. - Wu Qiu; Jing Yuan 001; Eranga Ukwatta; Yue Sun; Martin Rajchl; Aaron Fenster (IEEE Trans. Medical Imaging, 2014)

Interactive Hierarchical-Flow Segmentation of Scar Tissue From Late-Enhancement Cardiac MR Images. - Martin Rajchl; Jing Yuan 001; James A. White; Eranga Ukwatta; John Stirrat; Cyrus M. S. Nambakhsh; Feng P. Li; Terry M. Peters (IEEE Trans. Medical Imaging, 2014)

Multi-atlas Segmentation as a Graph Labelling Problem: Application to Partially Annotated Atlas Data. - Lisa M. Koch; Martin Rajchl; Tong Tong 001; Jonathan Passerat-Palmbach; Paul Aljabar; Daniel Rueckert (IPMI, 2015)

Automated pulmonary lobar ventilation measurements using volume-matched thoracic CT and MRI. - Fumin Guo; Sarah Svenningsen; Emma Bluemke; Martin Rajchl; Jing Yuan 001; Aaron Fenster; Grace Parraga (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2015)

Beyond the AHA 17-Segment Model: Motion-Driven Parcellation of the Left Ventricle. - Wenjia Bai; Devis Peressutti; Sarah Parisot; Ozan Oktay; Martin Rajchl; Declan P. O'Regan; Stuart A. Cook; Andrew P. King; Daniel Rueckert (STACOM@MICCAI, 2015)

Structured Decision Forests for Multi-modal Ultrasound Image Registration. - Ozan Oktay; Andreas Schuh; Martin Rajchl; Kevin Keraudren; Alberto Gómez 002; Mattias P. Heinrich; Graeme P. Penney; Daniel Rueckert (MICCAI (2), 2015)

A Continuous Flow-Maximisation Approach to Connectivity-Driven Cortical Parcellation. - Sarah Parisot; Martin Rajchl; Jonathan Passerat-Palmbach; Daniel Rueckert (MICCAI (3), 2015)

Automatic 3D US Brain Ventricle Segmentation in Pre-Term Neonates Using Multi-phase Geodesic Level-Sets with Shape Prior. - Wu Qiu; Jing Yuan 001; Jessica Kishimoto; Yimin Chen; Martin Rajchl; Eranga Ukwatta; Sandrine de Ribaupierre; Aaron Fenster (MICCAI (3), 2015)

Longitudinal Analysis of Pre-term Neonatal Brain Ventricle in Ultrasound Images Based on Convex Optimization. - Wu Qiu; Jing Yuan 001; Jessica Kishimoto; Yimin Chen; Martin Rajchl; Eranga Ukwatta; Sandrine de Ribaupierre; Aaron Fenster (MICCAI (3), 2015)

Optimization-based interactive segmentation interface for multi-region problems. - John S. H. Baxter; Martin Rajchl; Terry M. Peters; Elvis C. S. Chen (Image Processing, 2015)

Image-based reconstruction of 3D myocardial infarct geometry for patient specific applications. - Eranga Ukwatta; Martin Rajchl; James A. White; Farhad Pashakhanloo; Daniel A. Herzka; Elliot R. McVeigh; Albert C. Lardo; Natalia A. Trayanova; Fijoy Vadakkumpadan (Image Processing, 2015)

MRBrainS Challenge: Online Evaluation Framework for Brain Image Segmentation in 3T MRI Scans. - Adriënne M. Mendrik; Koen L. Vincken; Hugo J. Kuijf; Marcel Breeuwer; Willem H. Bouvy; Jeroen de Bresser; Amir Alansary; Marleen de Bruijne; Aaron Carass; Ayman El-Baz; Amod Jog; Ranveer Katyal; et al. (Comput. Intell. Neurosci., 2015)

A Proximal Bregman Projection Approach to Continuous Max-Flow Problems Using Entropic Distances. - John S. H. Baxter; Martin Rajchl; Jing Yuan 001; Terry M. Peters (CoRR, 2015)

Globally optimal co-segmentation of three-dimensional pulmonary 1H and hyperpolarized 3He MRI with spatial consistence prior. - Fumin Guo; Jing Yuan 001; Martin Rajchl; Sarah Svenningsen; Dante P. I. Capaldi; Khadija Sheikh; Aaron Fenster; Grace Parraga (Medical Image Anal., 2015)

Right ventricle segmentation from cardiac MRI: A collation study. - Caroline Petitjean; Maria A. Zuluaga; Wenjia Bai; Jean-Nicolas Dacher; Damien Grosgeorge; Jérôme Caudron; Su Ruan; Ismail Ben Ayed; Manuel Jorge Cardoso; Hsiang-Chou Chen; Daniel Jimenez-Carretero; María J. Ledesma-Carbayo; et al. (Medical Image Anal., 2015)

Joint segmentation of lumen and outer wall from femoral artery MR images: Towards 3D imaging measurements of peripheral arterial disease. - Eranga Ukwatta; Jing Yuan 001; Wu Qiu; Martin Rajchl; Bernard Chiu; Aaron Fenster (Medical Image Anal., 2015)

3D MR ventricle segmentation in pre-term infants with post-hemorrhagic ventricle dilatation (PHVD) using multi-phase geodesic level-sets. - Wu Qiu; Jing Yuan 001; Martin Rajchl; Jessica Kishimoto; Yimin Chen; Sandrine de Ribaupierre; Bernard Chiu; Aaron Fenster (NeuroImage, 2015)

Ultrasound Guidance for Beating Heart Mitral Valve Repair Augmented by Synthetic Dynamic CT. - Feng P. Li; Martin Rajchl; James A. White; Aashish Goela; Terry M. Peters (IEEE Trans. Medical Imaging, 2015)

Three-Dimensional Nonrigid MR-TRUS Registration Using Dual Optimization. - Yue Sun; Jing Yuan 001; Wu Qiu; Martin Rajchl; Cesare Romagnoli; Aaron Fenster (IEEE Trans. Medical Imaging, 2015)

Fast Deformable Image Registration with Non-smooth Dual Optimization. - Martin Rajchl; John S. H. Baxter; Wu Qiu; Ali R. Khan; Aaron Fenster; Terry M. Peters; Daniel Rueckert; Jing Yuan 001 (CVPR Workshops, 2016)

Discrete Optimisation for Group-Wise Cortical Surface Atlasing. - Emma C. Robinson; Ben Glocker; Martin Rajchl; Daniel Rueckert (CVPR Workshops, 2016)

Fast Fully Automatic Segmentation of the Human Placenta from Motion Corrupted MRI. - Amir Alansary; Konstantinos Kamnitsas; Alice Davidson; Rostislav Khlebnikov; Martin Rajchl; Christina Malamateniou; Mary A. Rutherford; Joseph V. Hajnal; Ben Glocker; Daniel Rueckert; Bernhard Kainz (MICCAI (2), 2016)

DeepCut: Object Segmentation from Bounding Box Annotations using Convolutional Neural Networks. - Martin Rajchl; Matthew C. H. Lee; Ozan Oktay; Konstantinos Kamnitsas; Jonathan Passerat-Palmbach; Wenjia Bai; Bernhard Kainz; Daniel Rueckert (CoRR, 2016)

Learning under Distributed Weak Supervision. - Martin Rajchl; Matthew C. H. Lee; Franklin Schrans; Alice Davidson; Jonathan Passerat-Palmbach; Giacomo Tarroni; Amir Alansary; Ozan Oktay; Bernhard Kainz; Daniel Rueckert (CoRR, 2016)

Hierarchical max-flow segmentation framework for multi-atlas segmentation with Kohonen self-organizing map based Gaussian mixture modeling. - Martin Rajchl; John S. H. Baxter; A. Jonathan McLeod; Jing Yuan 001; Wu Qiu; Terry M. Peters; Ali R. Khan (Medical Image Anal., 2016)

Semi-supervised Learning for Network-Based Cardiac MR Image Segmentation. - Wenjia Bai; Ozan Oktay; Matthew Sinclair; Hideaki Suzuki; Martin Rajchl; Giacomo Tarroni; Ben Glocker; Andrew P. King; Paul M. Matthews; Daniel Rueckert (MICCAI (2), 2017)

Ensembles of Multiple Models and Architectures for Robust Brain Tumour Segmentation. - Konstantinos Kamnitsas; Wenjia Bai; Enzo Ferrante; Steven McDonagh 001; Matthew Sinclair; Nick Pawlowski; Martin Rajchl; Matthew C. H. Lee; Bernhard Kainz; Daniel Rueckert; Ben Glocker (BrainLes@MICCAI, 2017)

Distance Metric Learning Using Graph Convolutional Networks: Application to Functional Brain Networks. - Sofia Ira Ktena; Sarah Parisot; Enzo Ferrante; Martin Rajchl; Matthew C. H. Lee; Ben Glocker; Daniel Rueckert (MICCAI (1), 2017)

Employing Weak Annotations for Medical Image Analysis Problems. - Martin Rajchl; Lisa M. Koch; Christian Ledig; Jonathan Passerat-Palmbach; Kazunari Misawa; Kensaku Mori; Daniel Rueckert (CoRR, 2017)

Human-level CMR image analysis with deep fully convolutional networks. - Wenjia Bai; Matthew Sinclair; Giacomo Tarroni; Ozan Oktay; Martin Rajchl; Ghislain Vaillant; Aaron M. Lee; Nay Aung; Elena Lukaschuk; Mihir M. Sanghvi; Filip Zemrak; Kenneth Fung; et al. (CoRR, 2017)

Implicit Weight Uncertainty in Neural Networks. - Nick Pawlowski; Martin Rajchl; Ben Glocker (CoRR, 2017)

DLTK: State of the Art Reference Implementations for Deep Learning on Medical Images. - Nick Pawlowski; Sofia Ira Ktena; Matthew C. H. Lee; Bernhard Kainz; Daniel Rueckert; Ben Glocker; Martin Rajchl (CoRR, 2017)

Directed Acyclic Graph Continuous Max-Flow Image Segmentation for Unconstrained Label Orderings. - John S. H. Baxter; Martin Rajchl; A. Jonathan McLeod; Jing Yuan 001; Terry M. Peters (Int. J. Comput. Vis., 2017)

PVR: Patch-to-Volume Reconstruction for Large Area Motion Correction of Fetal MRI. - Amir Alansary; Martin Rajchl; Steven G. McDonagh 001; Maria Murgasova; Mellisa Damodaram; David F. A. Lloyd; Alice Davidson; Mary A. Rutherford; Joseph V. Hajnal; Daniel Rueckert; Bernhard Kainz (IEEE Trans. Medical Imaging, 2017)

Stratified Decision Forests for Accurate Anatomical Landmark Localization in Cardiac Images. - Ozan Oktay; Wenjia Bai; Ricardo Guerrero; Martin Rajchl; Antonio de Marvao; Declan P. O'Regan; Stuart A. Cook; Mattias P. Heinrich; Ben Glocker; Daniel Rueckert (IEEE Trans. Medical Imaging, 2017)

DeepCut: Object Segmentation From Bounding Box Annotations Using Convolutional Neural Networks. - Martin Rajchl; Matthew C. H. Lee; Ozan Oktay; Konstantinos Kamnitsas; Jonathan Passerat-Palmbach; Wenjia Bai; Mellisa Damodaram; Mary A. Rutherford; Joseph V. Hajnal; Bernhard Kainz; Daniel Rueckert (IEEE Trans. Medical Imaging, 2017)

Learning Interpretable Anatomical Features Through Deep Generative Models: Application to Cardiac Remodeling. - Carlo Biffi; Ozan Oktay; Giacomo Tarroni; Wenjia Bai; Antonio M. Simoes Monteiro de Marvao; Georgia Doumou; Martin Rajchl; Reem Bedair; Sanjay K. Prasad; Stuart A. Cook; Declan P. O'Regan; Daniel Rueckert (MICCAI (2), 2018)

Automatic Shadow Detection in 2D Ultrasound Images. - Qingjie Meng; Christian F. Baumgartner; Matthew Sinclair; James Housden; Martin Rajchl; Alberto Gómez 002; Benjamin Hou; Nicolas Toussaint; Veronika A. M. Zimmer; Jeremy Tan; Jacqueline Matthew; Daniel Rueckert; et al. (DATRA/PIPPI@MICCAI, 2018)

Multi-modal Learning from Unpaired Images: Application to Multi-organ Segmentation in CT and MRI. - Vanya V. Valindria; Nick Pawlowski; Martin Rajchl; Ioannis Lavdas; Eric O. Aboagye; Andrea G. Rockall; Daniel Rueckert; Ben Glocker (WACV, 2018)

NeuroNet: Fast and Robust Reproduction of Multiple Brain Image Segmentation Pipelines. - Martin Rajchl; Nick Pawlowski; Daniel Rueckert; Paul M. Matthews; Ben Glocker (CoRR, 2018)

Deep Generative Models in the Real-World: An Open Challenge from Medical Imaging. - Xiaoran Chen; Nick Pawlowski; Martin Rajchl; Ben Glocker; Ender Konukoglu (CoRR, 2018)

Weakly Supervised Estimation of Shadow Confidence Maps in Ultrasound Imaging. - Qingjie Meng; Matthew Sinclair; Veronika A. M. Zimmer; Benjamin Hou; Martin Rajchl; Nicolas Toussaint; Alberto Gómez 002; James Housden; Jacqueline Matthew; Daniel Rueckert; Julia A. Schnabel; Bernhard Kainz (CoRR, 2018)

Metric learning with spectral graph convolutions on brain connectivity networks. - Sofia Ira Ktena; Sarah Parisot; Enzo Ferrante; Martin Rajchl; Matthew C. H. Lee; Ben Glocker; Daniel Rueckert (NeuroImage, 2018)

Multi-Atlas Segmentation Using Partially Annotated Data: Methods and Annotation Strategies. - Lisa M. Koch; Martin Rajchl; Wenjia Bai; Christian F. Baumgartner; Tong Tong 001; Jonathan Passerat-Palmbach; Paul Aljabar; Daniel Rueckert (IEEE Trans. Pattern Anal. Mach. Intell., 2018)

An ensemble of U-Net architecture variants for left atrial segmentation. - C. Wang; Martin Rajchl; Adrian D. C. Chan; Eranga Ukwatta (Computer-Aided Diagnosis, 2019)

Weakly Supervised Estimation of Shadow Confidence Maps in Fetal Ultrasound Imaging. - Qingjie Meng; James Housden; Jacqueline Matthew; Daniel Rueckert; Julia A. Schnabel; Bernhard Kainz; Matthew Sinclair; Veronika A. Zimmer; Benjamin Hou; Martin Rajchl; Nicolas Toussaint; Ozan Oktay; et al. (IEEE Trans. Medical Imaging, 2019)