Rapid Neighbour-Joining. - Martin Simonsen; Thomas Mailund; Christian N. S. Pedersen (WABI, 2008)

Building Very Large Neighbour-joining Trees. - Martin Simonsen; Thomas Mailund; Christian N. S. Pedersen (BIOINFORMATICS, 2010)

Inference of Large Phylogenies Using Neighbour-Joining. - Martin Simonsen; Thomas Mailund; Christian N. S. Pedersen (BIOSTEC (Selected Papers), 2010)

GPU-accelerated high-accuracy molecular docking using guided differential evolution: real world applications. - Martin Simonsen; Christian N. S. Pedersen; Mikael H. Christensen; René Thomsen (GECCO, 2011)

Rapid computation of distance estimators from nucleotide and amino acid alignments. - Martin Simonsen; Christian N. S. Pedersen (SAC, 2011)

Gene Ontology-driven inference of protein-protein interactions using inducers. - Stefan Maetschke; Martin Simonsen; Melissa J. Davis; Mark A. Ragan (Bioinform., 2012)

Automatic selection of reference taxa for protein-protein interaction prediction with phylogenetic profiling. - Martin Simonsen; Stefan Maetschke; Mark A. Ragan (Bioinform., 2012)

GPU-Accelerated High-Accuracy Molecular Docking Using Guided Differential Evolution. - Martin Simonsen; Mikael H. Christensen; René Thomsen; Christian N. S. Pedersen (Massively Parallel Evolutionary Computation on GPGPUs, 2013)