Ranking of Survival-Related Gene Sets Through Integration of Single-Sample Gene Set Enrichment and Survival Analysis. - Martin Spendl; Jaka Kokosar; Ela Praznik; Luka Ausec; Blaz Zupan (AIME, 2023)

Gene Interactions in Survival Data Analysis: A Data-Driven Approach Using Restricted Mean Survival Time and Literature Mining. - Jaka Kokosar; Martin Spendl; Blaz Zupan (DS, 2023)

Latent Embedding Based on a Transcription-Decay Decomposition of mRNA Dynamics Using Self-supervised CoxPH. - Martin Spendl; Tomaz Curk; Blaz Zupan (DS (1), 2024)

Teaching bioinformatics through the analysis of SARS-CoV-2: project-based training for computer science students. - Pavlin G. Policar; Martin Spendl; Tomaz Curk; Blaz Zupan (Bioinform., 2024)

Large scale gene set ranking for survival-related gene sets. - Martin Spendl; Jaka Kokosar; Ela Praznik; Luka Ausec; Miha Stajdohar; Blaz Zupan (Artif. Intell. Medicine, 2025)

Automated Assignment Grading with Large Language Models: Insights From a Bioinformatics Course. - Pavlin G. Policar; Martin Spendl; Tomaz Curk; Blaz Zupan (CoRR, 2025)