Testing and validation of the Automated Topology Builder (ATB) version 2.0: prediction of hydration free enthalpies. - Katarzyna B. Koziara; Martin Stroet; Alpeshkumar K. Malde; Alan E. Mark (J. Comput. Aided Mol. Des., 2014)

PyThinFilm: Automated Molecular Dynamics Simulation Protocols for the Generation of Thin Film Morphologies. - Martin Stroet; Stephen Sanderson; Audrey V. Sanzogni; Sharif Nada; Thomas Lee; Bertrand Caron; Alan E. Mark; Paul L. Burn (J. Chem. Inf. Model., 2023)

OFraMP: a fragment-based tool to facilitate the parametrization of large molecules. - Martin Stroet; Bertrand Caron; Martin S. Engler; Jimi van der Woning; Aude Kauffmann; Marc van Dijk; Mohammed El-Kebir; Koen Visscher; Josef Holownia; Callum Macfarlane; Brian J. Bennion; Svetlana Gelpi-Dominguez; et al. (J. Comput. Aided Mol. Des., 2023)