A new interactive protein sequence alignment program and comparison of its results with widely used algorithms. - Renas Rechid; Martin Vingron; Patrick Argos (Comput. Appl. Biosci., 1989)

A fast and sensitive multiple sequence alignment algorithm. - Martin Vingron; P. Argos (Comput. Appl. Biosci., 1989)

Multiple Sequence Comparison and n-Dimensional Image Reconstruction. - Martin Vingron; Pavel A. Pevzner (CPM, 1993)

Comparison of annotating duplication, tree mapping, and copying as methods to compare gene trees with species trees. - Oliver Eulenstein; Boris G. Mirkin; Martin Vingron (Mathematical Hierarchies and Biology, 1996)

A Clustering Approach to Generalized Tree Alignment with Application to Alu Repeats. - Benno Schwikowski; Martin Vingron (German Conference on Bioinformatics - Selected Papers, 1996)

Attacking Generalized tree Alignment by a Deferred Path Heuristic. - Benno Schwikowski; Martin Vingron (German Conference on Bioinformatics, 1996)

Alignment Networks and Electrical Networks. - Martin Vingron; Michael S. Waterman (Discret. Appl. Math., 1996)

Towards detection of sequence orthologs. - Yan P. Yuan; Oliver Eulenstein; Martin Vingron; Peer Bork (German Conference on Bioinformatics, 1997)

The Deferred Path Heuristic for the Generalized Tree Alignment Problem. - Benno Schwikowski; Martin Vingron (J. Comput. Biol., 1997)

Towards Integration of Multiple Alignment and Phylogenetic Tree Construction. - Martin Vingron; Arndt von Haeseler (J. Comput. Biol., 1997)

Sequence alignment and phylogeny construction. - Martin Vingron (Mathematical Support for Molecular Biology, 1998)

Automatic clustering of large sequence databases. - Antje Krause; Pierre Nicodème; Marc Rehmsmeier; Martin Vingron (German Conference on Bioinformatics, 1998)

pfastDNAml: Using Parallel Computing for Maximum Likelihood Phylogenetic Analysis. - Heiko A. Schmidt; Martin Vingron (German Conference on Bioinformatics, 1998)

Alignment and Phylogeny Construction for Biological Sequences. - Martin Vingron (IFIP Congress: Fundamentals - Foundations of Computer Science, 1998)

A set-theoretic approach to database searching and clustering. - Antje Krause; Martin Vingron (Bioinform., 1998)

Statistics of large-scale sequence searching. - Rainer Spang; Martin Vingron (Bioinform., 1998)

Towards detection of orthologues in sequence databases. - Yan P. Yuan; Oliver Eulenstein; Martin Vingron; Peer Bork (Bioinform., 1998)

On the Equivalence of Two Tree Mapping Measures. - Oliver Eulenstein; Martin Vingron (Discret. Appl. Math., 1998)

Duplication-Based Measures of Difference Between Gene and Species Trees. - Oliver Eulenstein; Boris G. Mirkin; Martin Vingron (J. Comput. Biol., 1998)

A Polyhedral Approach to RNA Sequence Structure Alignment. - Hans-Peter Lenhof; Knut Reinert; Martin Vingron (J. Comput. Biol., 1998)

A new method for modeling protein evolution. - Tobias Müller 001; Rainer Spang; Martin Vingron (German Conference on Bioinformatics, 1999)

Phylogeny meets sequence search. - Marc Rehmsmeier; Martin Vingron (German Conference on Bioinformatics, 1999)

q-gram based database searching using a suffix array (QUASAR). - Stefan Burkhardt; Andreas Crauser; Paolo Ferragina; Hans-Peter Lenhof; Eric Rivals; Martin Vingron (RECOMB, 1999)

WWW access to the SYSTERS protein sequence cluster set. - Antje Krause; Pierre Nicodème; Erich Bornberg-Bauer; Marc Rehmsmeier; Martin Vingron (Bioinform., 1999)

Tree fitting: an algebraic approach using profile distances. - Richard Desper; Martin Vingron (RECOMB, 2000)

Contig selection in physical mapping. - Steffen Heber; Jens Stoye; Jörg D. Hoheisel; Martin Vingron (RECOMB, 2000)

Processing and quality control of DNA array hybridization data. - Tim Beißbarth; Kurt Fellenberg; Benedikt Brors; Rosa Arribas-Prat; Judith M. Boer; Nicole C. Hauser; Marcel Scheideler; Jörg D. Hoheisel; Günther Schütz; Annemarie Poustka; Martin Vingron (Bioinform., 2000)

A polyhedral approach to sequence alignment problems. - John D. Kececioglu; Hans-Peter Lenhof; Kurt Mehlhorn; Petra Mutzel; Knut Reinert; Martin Vingron (Discret. Appl. Math., 2000)

Contig Selection in Physical Mapping. - Steffen Heber; Jens Stoye; Marcus Frohme; Jörg D. Hoheisel; Martin Vingron (J. Comput. Biol., 2000)

Modeling Amino Acid Replacement. - Tobias Müller 001; Martin Vingron (J. Comput. Biol., 2000)

The SYSTERS protein sequence cluster set. - Antje Krause; Jens Stoye; Martin Vingron (Nucleic Acids Res., 2000)

Axeldb: a Xenopus laevis database focusing on gene expression. - Nicolas Pollet; Heiko A. Schmidt; Volker Gawantka; Martin Vingron; Christof Niehrs (Nucleic Acids Res., 2000)

Identifying splits with clear separation: a new class discovery method for gene expression data. - Anja von Heydebreck; Wolfgang Huber; Annemarie Poustka; Martin Vingron (ISMB (Supplement of Bioinformatics), 2001)

Limits of homology detection by pairwise sequence comparison. - Rainer Spang; Martin Vingron (Bioinform., 2001)

Bioinformatics needs to adopt statistical thinking - Editorial. - Martin Vingron (Bioinform., 2001)

Variance Stabilization and Robust Normalization for Microarray Gene Expression Data. - Anja von Heydebreck; Wolfgang Huber; Annemarie Poustka; Martin Vingron (COMPSTAT, 2002)

Theoretical analysis of alternative splice forms using computational methods. - Stéphanie Boué; Martin Vingron; Evgenia V. Kriventseva; Ina Koch (ECCB, 2002)

Annotating regulatory DNA based on man-mouse genomic comparison. - Christoph Dieterich; Brian Cusack; Haiyan Wang; Katja Rateitschak; Antje Krause; Martin Vingron (ECCB, 2002)

Proteome analysis based on motif statistics. - Pierre Nicodème; T. Doerks; Martin Vingron (ECCB, 2002)

Variance stabilization applied to microarray data calibration and to the quantification of differential expression. - Wolfgang Huber; Anja von Heydebreck; Holger Sültmann; Annemarie Poustka; Martin Vingron (ISMB, 2002)

Microarray data warehouse allowing for inclusion of experiment annotations in statistical analysis. - Kurt Fellenberg; Nicole C. Hauser; Benedikt Brors; Jörg D. Hoheisel; Martin Vingron (Bioinform., 2002)

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. - Heiko A. Schmidt; Korbinian Strimmer; Martin Vingron; Arndt von Haeseler (Bioinform., 2002)

Bioinformatics research and education in Germany. - Dietmar Schomburg; Martin Vingron (Silico Biol., 2002)

SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein. - Antje Krause; Stefan A. Haas; Eivind Coward; Martin Vingron (Nucleic Acids Res., 2002)

Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites. - Christoph Dieterich; Ralf Herwig; Martin Vingron (ECCB, 2003)

The SYSTERS protein family database: Taxon-related protein family size distributions and singleton frequencies. - Thomas Meinel; Martin Vingron; Antje Krause (German Conference on Bioinformatics, 2003)

Gaussian Mixture Density Estimation Applied to Microarray Data. - Christine Steinhoff; Tobias Müller 001; Ulrike A. Nuber; Martin Vingron (IDA, 2003)

Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions. - Benno Schwikowski; Martin Vingron (Discret. Appl. Math., 2003)

Molecular phylogenetics: parallelized parameter estimation and quartet puzzling. - Heiko A. Schmidt; Ekkehard Petzold; Martin Vingron; Arndt von Haeseler (J. Parallel Distributed Comput., 2003)

CORG: a database for COmparative Regulatory Genomics. - Christoph Dieterich; Haiyan Wang; Katja Rateitschak; Hannes Luz; Martin Vingron (Nucleic Acids Res., 2003)

Functional inference from non-random distributions of conserved predicted transcription factor binding sites. - Christoph Dieterich; Sven Rahmann; Martin Vingron (ISMB/ECCB (Supplement of Bioinformatics), 2004)

Optimal robust non-unique probe selection using Integer Linear Programming. - Gunnar W. Klau; Sven Rahmann; Alexander Schliep; Martin Vingron; Knut Reinert (ISMB/ECCB (Supplement of Bioinformatics), 2004)

Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome. - Thomas Manke; Christoph Dieterich; Martin Vingron (Regulatory Genomics, 2004)

The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. - Torsten Crass; Iris Antes; Rico Basekow; Peer Bork; Christian Buning; Maik Christensen; Holger Claussen 002; Christian Ebeling; Peter Ernst; Valérie Gailus-Durner; Karl-Heinz Glatting; Rolf Gohla; et al. (Bioinform., 2004)

Genome wide identification and classification of alternative splicing based on EST data. - Shobhit Gupta; Dorothea Zink; Bernhard Korn; Martin Vingron; Stefan A. Haas (Bioinform., 2004)

Annotating significant pairs of transcription factor binding sites in regulatory DNA. - Katja Rateitschak; Tobias Müller 001; Martin Vingron (Silico Biol., 2004)

Genexpressionsanalyse komplexer klinischer Phänotypen mittels cDNS-Arrays (Gene Expression Profiling of Complex Clinical Phenotypes using cDNA-Arrays). - Anja von Heydebreck; Silke Sperling; Bogac Kaynak; Hans Lehrach; Martin Vingron (it Inf. Technol., 2004)

IntAct: an open source molecular interaction database. - Henning Hermjakob; Luisa Montecchi-Palazzi; Chris Lewington; Sugath Mudali; Samuel Kerrien; Sandra E. Orchard; Martin Vingron; Bernd Roechert; Peter Roepstorff; Alfonso Valencia; Hanah Margalit; John Armstrong; et al. (Nucleic Acids Res., 2004)

05441 Executive Summary - Managing and Mining Genome Information: Frontiers in Bioinformatics. - Jacek Blazewicz; Johann Christoph Freytag; Martin Vingron (Managing and Mining Genome Information, 2005)

05441 Abstracts Collection - Managing and Mining Genome Information: Frontiers in Bioinformatics. - Jacek Blazewicz; Johann Christoph Freytag; Martin Vingron (Managing and Mining Genome Information, 2005)

Familz specific rates of protein evolution. - Hannes Luz; Martin Vingron (German Conference on Bioinformatics, 2005)

SITEBLAST-rapid and sensitive local alignment of genomic sequences employing motif anchors. - Morris Michael; Christoph Dieterich; Martin Vingron (Bioinform., 2005)

Large scale hierarchical clustering of protein sequences. - Antje Krause; Jens Stoye; Martin Vingron (BMC Bioinform., 2005)

T-STAG: resource and web-interface for tissue-specific transcripts and genes. - Shobhit Gupta; Martin Vingron; Stefan A. Haas (Nucleic Acids Res., 2005)

The SYSTERS Protein Family Database in 2005. - Thomas Meinel; Antje Krause; Hannes Luz; Martin Vingron; Eike Staub (Nucleic Acids Res., 2005)

SVC: structured visualization of evolutionary sequence conservation. - Stefan Roepcke; Petko Fiziev; P. H. Seeburg; Martin Vingron (Nucleic Acids Res., 2005)

T-Reg Comparator: an analysis tool for the comparison of position weight matrices. - Stefan Roepcke; Steffen Grossmann; Sven Rahmann; Martin Vingron (Nucleic Acids Res., 2005)

An Improved Algorithm for the Macro-evolutionary Phylogeny Problem. - Behshad Behzadi; Martin Vingron (CPM, 2006)

Reconstructing Domain Compositions of Ancestral Multi-domain Proteins. - Behshad Behzadi; Martin Vingron (Comparative Genomics, 2006)

An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets. - Steffen Grossmann; Sebastian Bauer 002; Peter N. Robinson; Martin Vingron (RECOMB, 2006)

Alignment Statistics for Long-Range Correlated Genomic Sequences. - Philipp W. Messer; Ralf Bundschuh; Martin Vingron; Peter F. Arndt (RECOMB, 2006)

Normalization and quantification of differential expression in gene expression microarrays. - Christine Steinhoff; Martin Vingron (Briefings Bioinform., 2006)

Family specific rates of protein evolution. - Hannes Luz; Martin Vingron (Bioinform., 2006)

A joint model of regulatory and metabolic networks. - Chen-Hsiang Yeang; Martin Vingron (BMC Bioinform., 2006)

A physical model for tiling array analysis. - Ho-Ryun Chung; Dennis Kostka; Martin Vingron (ISMB/ECCB (Supplement of Bioinformatics), 2007)

Simultaneous alignment and annotation of cis-regulatory regions. - Abha Singh Bais; Steffen Grossmann; Martin Vingron (Bioinform., 2007)

Improved detection of overrepresentation of Gene-Ontology annotations with parent-child analysis. - Steffen Grossmann; Sebastian Bauer 002; Peter N. Robinson; Martin Vingron (Bioinform., 2007)

Predicting transcription factor affinities to DNA from a biophysical model. - Helge G. Roider; Aditi Kanhere; Thomas Manke; Martin Vingron (Bioinform., 2007)

The Otto Warburg International Summer School and Workshop on Networks and Regulation. - Peter F. Arndt; Martin Vingron (BMC Bioinform., 2007)

Integer linear programming approaches for non-unique probe selection. - Gunnar W. Klau; Sven Rahmann; Alexander Schliep; Martin Vingron; Knut Reinert (Discret. Appl. Math., 2007)

Effects of Long-Range Correlations in DNA on Sequence Alignment Score Statistics. - Philipp W. Messer; Ralf Bundschuh; Martin Vingron; Peter F. Arndt (J. Comput. Biol., 2007)

Developments in CORG: a gene-centric comparative genomics resource. - Christoph Dieterich; M. W. Franz; Martin Vingron (Nucleic Acids Res., 2007)

Fast and Adaptive Variable Order Markov Chain Construction. - Marcel H. Schulz; David Weese; Tobias Rausch; Andreas Döring 001; Knut Reinert; Martin Vingron (WABI, 2008)

The BREW workshop series: a stimulating experience in PhD education. - Robert Giegerich; Alvis Brazma; Inge Jonassen; Esko Ukkonen; Martin Vingron (Briefings Bioinform., 2008)

Ontologizer 2.0 - a multifunctional tool for GO term enrichment analysis and data exploration. - Sebastian Bauer 002; Steffen Grossmann; Martin Vingron; Peter N. Robinson (Bioinform., 2008)

Natural similarity measures between position frequency matrices with an application to clustering. - Utz J. Pape; Sven Rahmann; Martin Vingron (Bioinform., 2008)

Prioritization of gene regulatory interactions from large-scale modules in yeast. - Ho-Joon Lee; Thomas Manke; Ricardo Bringas; Martin Vingron (BMC Bioinform., 2008)

Compound Poisson Approximation of the Number of Occurrences of a Position Frequency Matrix (PFM) on Both Strands. - Utz J. Pape; Sven Rahmann; Fengzhu Sun; Martin Vingron (J. Comput. Biol., 2008)

Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions. - Thomas Manke; Helge G. Roider; Martin Vingron (PLoS Comput. Biol., 2008)

Exact Score Distribution Computation for Similarity Searches in Ontologies. - Marcel H. Schulz; Sebastian Köhler 001; Sebastian Bauer 002; Martin Vingron; Peter N. Robinson (WABI, 2009)

Statistical detection of cooperative transcription factors with similarity adjustment. - Utz J. Pape; Holger Klein; Martin Vingron (Bioinform., 2009)

PASTAA: identifying transcription factors associated with sets of co-regulated genes. - Helge G. Roider; Thomas Manke; Sean O'Keeffe; Martin Vingron; Stefan A. Haas (Bioinform., 2009)

Comparison of sequence-dependent tiling array normalization approaches. - Ho-Ryun Chung; Martin Vingron (BMC Bioinform., 2009)

Maximum Similarity: A New Formulation of Phylogenetic Reconstruction. - Xiaoqiu Huang 001; Martin Vingron (J. Comput. Biol., 2009)

Evidence for Gene-Specific Rather Than Transcription Rate-Dependent Histone H3 Exchange in Yeast Coding Regions. - Irit Gat-Viks; Martin Vingron (PLoS Comput. Biol., 2009)

A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes. - Guofeng Meng; Axel Mosig; Martin Vingron (BMC Bioinform., 2010)

Studying the Evolution of Promoter Sequences: A Waiting Time Problem. - Sarah Behrens; Martin Vingron (J. Comput. Biol., 2010)

Introducing Knowledge into Differential Expression Analysis. - Ewa Szczurek; Przemyslaw Biecek; Jerzy Tiuryn; Martin Vingron (J. Comput. Biol., 2010)

TransFind - predicting transcriptional regulators for gene sets. - Szymon M. Kielbasa; Holger Klein; Helge G. Roider; Martin Vingron; Nils Blüthgen (Nucleic Acids Res., 2010)

Computational Regulatory Genomics. - Martin Vingron (CPM, 2011)

DeBi: Discovering Differentially Expressed Biclusters using a Frequent Itemset Approach. - Akdes Serin; Martin Vingron (Algorithms Mol. Biol., 2011)

Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data. - Ewa Szczurek; Florian Markowetz; Irit Gat-Viks; Przemyslaw Biecek; Jerzy Tiuryn; Martin Vingron (BMC Bioinform., 2011)

Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series. - Yuan Yuan; Yi-Ping Phoebe Chen; Shengyu Ni; Augix Guohua Xu; Lin Tang; Martin Vingron; Mehmet Somel; Philipp Khaitovich (BMC Bioinform., 2011)

Combinatorial Binding in Human and Mouse Embryonic Stem Cells Identifies Conserved Enhancers Active in Early Embryonic Development. - Jonathan Göke; Marc Jung; Sarah Behrens; Lukas Chavez; Sean O'Keeffe; Bernd Timmermann; Hans Lehrach; James Adjaye; Martin Vingron (PLoS Comput. Biol., 2011)

Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS. - Anne-Katrin Emde; Marcel H. Schulz; David Weese; Ruping Sun; Martin Vingron; Vera M. Kalscheuer; Stefan A. Haas; Knut Reinert (Bioinform., 2012)

Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts. - Jonathan Göke; Marcel H. Schulz; Julia Lasserre; Martin Vingron (Bioinform., 2012)

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels. - Marcel H. Schulz; Daniel R. Zerbino; Martin Vingron; Ewan Birney (Bioinform., 2012)

Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads. - Ruping Sun; Michael I. Love; Tomasz Zemojtel; Anne-Katrin Emde; Ho-Ryun Chung; Martin Vingron; Stefan A. Haas (Bioinform., 2012)

Detection of interacting transcription factors in human tissues using predicted DNA binding affinity. - Alena Mysicková; Martin Vingron (BMC Genom., 2012)

Predicting the outcome of renal transplantation. - Julia Lasserre; Steffen Arnold; Martin Vingron; Petra Reinke; Carl Hinrichs (J. Am. Medical Informatics Assoc., 2012)

R2KS: A Novel Measure for Comparing Gene Expression Based on Ranked Gene Lists. - Shengyu Ni; Martin Vingron (J. Comput. Biol., 2012)

Inferring nucleosome positions with their histone mark annotation from ChIP data. - Alessandro Mammana; Martin Vingron; Ho-Ryun Chung (Bioinform., 2013)

Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks. - Julia Lasserre; Ho-Ryun Chung; Martin Vingron (PLoS Comput. Biol., 2013)

Condition-specific target prediction from motifs and expression. - Guofeng Meng; Martin Vingron (Bioinform., 2014)

Inferring the paths of somatic evolution in cancer. - Navodit Misra; Ewa Szczurek; Martin Vingron (Bioinform., 2014)

histoneHMM: Differential analysis of histone modifications with broad genomic footprints. - Matthias Heinig; Maria Colomé-Tatché; Aaron Taudt; Carola Rintisch; Sebastian Schafer; Michal Pravenec; Norbert Hübner; Martin Vingron; Frank Johannes (BMC Bioinform., 2015)

Reconstruction of gene networks using prior knowledge. - Mahsa Ghanbari; Julia Lasserre; Martin Vingron (BMC Syst. Biol., 2015)

Improved Prediction of Non-methylated Islands in Vertebrates Highlights Different Characteristic Sequence Patterns. - Matthew R. Huska; Martin Vingron (PLoS Comput. Biol., 2016)

Time-Dependent Gene Network Modelling by Sequential Monte Carlo. - Sergiy Ancherbak; Ercan E. Kuruoglu; Martin Vingron (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

An improved compound Poisson model for the number of motif hits in DNA sequences. - Wolfgang Kopp; Martin Vingron (Bioinform., 2017)

Sparse-Group Bayesian Feature Selection Using Expectation Propagation for Signal Recovery and Network Reconstruction. - Edgar Steiger; Martin Vingron (CoRR, 2018)

coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers. - Alena van Bömmel; Michael I. Love; Ho-Ryun Chung; Martin Vingron (PLoS Comput. Biol., 2018)

The Distance Precision Matrix: computing networks from non-linear relationships. - Mahsa Ghanbari; Julia Lasserre; Martin Vingron (Bioinform., 2019)

SVIM: structural variant identification using mapped long reads. - David Heller; Martin Vingron (Bioinform., 2019)

Predicting enhancers in mammalian genomes using supervised hidden Markov models. - Tobias Zehnder; Philipp Benner; Martin Vingron (BMC Bioinform., 2019)

DNA Motif Match Statistics Without Poisson Approximation. - Wolfgang Kopp; Martin Vingron (J. Comput. Biol., 2019)

ModHMM: A Modular Supra-Bayesian Genome Segmentation Method. - Philipp Benner; Martin Vingron (J. Comput. Biol., 2020)

Ranbow: A fast and accurate method for polyploid haplotype reconstruction. - M-Hossein Moeinzadeh; Jun Yang 043; Evgeny Muzychenko; Giuseppe Gallone; David Heller; Knut Reinert; Stefan A. Haas; Martin Vingron (PLoS Comput. Biol., 2020)

ISCB Honors 2021 Award Recipients Peer Bork, Barbara Engelhardt, Ben Raphael, Teresa Attwood. - Christiana N. Fogg; Diane E. Kovats; Martin Vingron (Bioinform., 2021)

SVIM-asm: structural variant detection from haploid and diploid genome assemblies. - David Heller; Martin Vingron (Bioinform., 2021)

2022 ISCB Accomplishments by a Senior Scientist Award: Ron Shamir. - Christina Fogg; Diane E. Kovats; Martin Vingron (Bioinform., 2022)

2022 ISCB Overton Prize: Po-Ru Loh. - Christina Fogg; Diane E. Kovats; Martin Vingron (Bioinform., 2022)

2022 ISCB Innovator Award: Núria López-Bigas. - Christina Fogg; Diane E. Kovats; Martin Vingron (Bioinform., 2022)

2022 Outstanding Contributions to ISCB Award: Reinhard Schneider. - Christina Fogg; Diane E. Kovats; Martin Vingron (Bioinform., 2022)

Special Issue: Professor Michael Waterman's 80th Birthday, Part 1. - Sorin Istrail; Pavel A. Pevzner; Fengzhu Sun; Martin Vingron (J. Comput. Biol., 2022)

Michael Waterman's Contributions to Computational Biology and Bioinformatics. - Pavel A. Pevzner; Martin Vingron; Christian M. Reidys; Fengzhu Sun; Sorin Istrail (J. Comput. Biol., 2022)

Effect of imputation on gene network reconstruction from single-cell RNA-seq data. - Lam-Ha Ly; Martin Vingron (Patterns, 2022)

2023 Outstanding Contributions to ISCB Award: Shoba Ranganathan. - Christiana N. Fogg; Diane E. Kovats; Martin Vingron (Bioinform., 2023)

2023 ISCB Overton Prize: Jingyi Jessica Li. - Christiana N. Fogg; Diane E. Kovats; Martin Vingron (Bioinform., 2023)

2023 ISCB innovator award: Dana Pe'er. - Christiana N. Fogg; Diane E. Kovats; Martin Vingron (Bioinform., 2023)

2023 ISCB accomplishments by a senior scientist award: Mark Gerstein. - Christiana N. Fogg; Diane E. Kovats; Martin Vingron (Bioinform., 2023)

CENTRE: a gradient boosting algorithm for Cell-type-specific ENhancer-Target pREdiction. - Trisevgeni Rapakoulia; Sara Lopez Ruiz De Vargas; Persia Akbari Omgba; Verena Laupert; Igor Ulitsky; Martin Vingron (Bioinform., 2023)