GandrKB–ontological microarray annotation and visualization. - Daniel Schober; Ulf Leser; Martin Zenke; Jens G. Reich (Bioinform., 2005)

Public microarray repository semantic annotation with ontologies employing text mining and expression profile correlation. - David Ruau; Corinna Kolárik; Heinz-Theodor Mevissen; Emmanuel Müller; Ira Assent; Ralph Krieger; Thomas Seidl 001; Martin Hofmann-Apitius; Martin Zenke (BMC Bioinform., 2008)

Detection of active transcription factor binding sites with the combination of DNase hypersensitivity and histone modifications. - Eduardo G. Gusmão; Christoph Dieterich; Martin Zenke; Ivan G. Costa (Bioinform., 2014)

TGF-beta stimulation in human and murine cells reveals commonly affected biological processes and pathways at transcription level. - Khalid Abnaof; Nikhil Mallela; Gudrun Walenda; Steffen Meurer; Kristin Seré; Qiong Lin; Bert Smeets; Kurt Hoffmann; Wolfgang Wagner 003; Martin Zenke; Ralf Weiskirchen; Holger Fröhlich (BMC Syst. Biol., 2014)

Detecting differential peaks in ChIP-seq signals with ODIN. - Manuel Allhoff; Kristin Seré; Heike Chauvistré; Qiong Lin; Martin Zenke; Ivan G. Costa (Bioinform., 2015)

Control of Dynamically Inherent Biological Processes in Cell Technolog. - Adam Malik; Ulrike Meyr; Werner Herfs; Martin Zenke; Paul Wanek (ICE/ITMC, 2018)

Semantic modeling of a cyber-physical biological production platform. - Simon Pieske; Werner Herfs; Martin Zenke; Simon Storms; Christian Brecher (ETFA, 2022)

RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data. - Zhijian Li; Chao-Chung Kuo; Fabio Ticconi; Mina Shaigan; Julia Gehrmann; Eduardo G. Gusmão; Manuel Allhoff; Martin Manolov; Martin Zenke; Ivan G. Costa (BMC Bioinform., 2023)