WikiPathways: building research communities on biological pathways. - Thomas Kelder; Martijn P. van Iersel; Kristina Hanspers; Martina Kutmon; Bruce R. Conklin; Chris T. A. Evelo; Alexander R. Pico (Nucleic Acids Res., 2012)

Integrated Visualization of a Multi-omics Study of Starvation in Mouse Intestine. - Martijn P. van Iersel; Milka Sokolovic; Kaatje Lenaerts; Martina Kutmon; Freek G. Bouwman; Wouter H. Lamers; Edwin C. M. Mariman; Chris T. A. Evelo (J. Integr. Bioinform., 2014)

Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment. - Anwesha Bohler; Lars M. T. Eijssen; Martijn P. van Iersel; Christ Leemans; Egon L. Willighagen; Martina Kutmon; Magali Jaillard; Chris T. A. Evelo (BMC Bioinform., 2015)

PathVisio 3: An Extendable Pathway Analysis Toolbox. - Martina Kutmon; Martijn P. van Iersel; Anwesha Bohler; Thomas Kelder; Nuno Nunes 002; Alexander R. Pico; Chris T. A. Evelo (PLoS Comput. Biol., 2015)

The systems biology format converter. - Nicolas Rodriguez 001; Jean-Baptiste Pettit; Piero Dalle Pezze; Lu Li 002; Arnaud Henry; Martijn P. van Iersel; Gaël Jalowicki; Martina Kutmon; Kedar Nath Natarajan; David Tolnay; Melanie I. Stefan; Chris T. A. Evelo; et al. (BMC Bioinform., 2016)

WikiPathways: capturing the full diversity of pathway knowledge. - Martina Kutmon; Anders Riutta; Nuno Nunes 002; Kristina Hanspers; Egon L. Willighagen; Anwesha Bohler; Jonathan Mélius; Andra Waagmeester; Sravanthi R. Sinha; Ryan A. Miller; Susan L. Coort; Elisa Cirillo; et al. (Nucleic Acids Res., 2016)

Reactome from a WikiPathways Perspective. - Anwesha Bohler; Guanming Wu; Martina Kutmon; Leontius Adhika Pradhana; Susan L. Coort; Kristina Hanspers; Robin Haw; Alexander R. Pico; Chris T. A. Evelo (PLoS Comput. Biol., 2016)

Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources. - Andra Waagmeester; Martina Kutmon; Anders Riutta; Ryan A. Miller; Egon L. Willighagen; Chris T. A. Evelo; Alexander R. Pico (PLoS Comput. Biol., 2016)

Visualizing Metabolomics Data in Directed Biological Networks. - Ryan A. Miller; Denise N. Slenter; Martina Kutmon; Jonathan Mélius; Georg Summer; Chris T. A. Evelo; Egon L. Willighagen (SWAT4LS, 2017)

Providing gene-to-variant and variant-to-gene database identifier mappings to use with BridgeDb mapping services. - Friederike Ehrhart; Jonathan Mélius; Elisa Cirillo; Martina Kutmon; Egon L. Willighagen; Susan L. Coort; Leopold M. G. Curfs; Chris T. A. Evelo (F1000Research, 2018)

CyTargetLinker app update: A flexible solution for network extension in Cytoscape. - Martina Kutmon; Friederike Ehrhart; Egon L. Willighagen; Chris T. A. Evelo; Susan L. Coort (F1000Research, 2018)

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research. - Denise N. Slenter; Martina Kutmon; Kristina Hanspers; Anders Riutta; Jacob Windsor; Nuno Nunes 002; Jonathan Mélius; Elisa Cirillo; Susan L. Coort; Daniela Digles; Friederike Ehrhart; Pieter Giesbertz; et al. (Nucleic Acids Res., 2018)

WikiPathways: connecting communities. - Marvin Martens; Ammar Ammar; Anders Riutta; Andra Waagmeester; Denise N. Slenter; Kristina Hanspers; Ryan A. Miller; Daniela Digles; Elisson N. Lopes; Friederike Ehrhart; Lauren J. Dupuis; Laurent A. Winckers; et al. (Nucleic Acids Res., 2021)

Ten simple rules for creating reusable pathway models for computational analysis and visualization. - Kristina Hanspers; Martina Kutmon; Susan L. Coort; Daniela Digles; Lauren J. Dupuis; Friederike Ehrhart; Finterly Hu; Elisson N. Lopes; Marvin Martens; Nhung Pham; Woosub Shin; Denise N. Slenter; et al. (PLoS Comput. Biol., 2021)

Comparison of metabolic states using genome-scale metabolic models. - Chaitra Sarathy; Marian Breuer; Martina Kutmon; Michiel E. Adriaens; Chris T. A. Evelo; Ilja C. W. Arts (PLoS Comput. Biol., 2021)