GeNet: A Graph-Based Genetic Programming Framework for the Reverse Engineering of Gene Regulatory Networks. - Leonardo Vanneschi; Matteo Mondini; Martino Bertoni; Alberto Ronchi; Mattia Stefano (EvoBIO, 2012)

Gene regulatory networks reconstruction from time series datasets using genetic programming: a comparison between tree-based and graph-based approaches. - Leonardo Vanneschi; Matteo Mondini; Martino Bertoni; Alberto Ronchi; Mattia Stefano (Genet. Program. Evolvable Mach., 2013)

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. - Marco Biasini; Stefan Bienert; Andrew Waterhouse; Konstantin Arnold; Gabriel Studer; Tobias Schmidt; Florian Kiefer; Tiziano Gallo Cassarino; Martino Bertoni; Lorenza Bordoli; Torsten Schwede (Nucleic Acids Res., 2014)

SWISS-MODEL: homology modelling of protein structures and complexes. - Andrew Waterhouse; Martino Bertoni; Stefan Bienert; Gabriel Studer; Gerardo Tauriello; Rafal Gumienny; Florian T. Heer; Tjaart A. P. de Beer; Christine Rempfer; Lorenza Bordoli; Rosalba Lepore; Torsten Schwede (Nucleic Acids Res., 2018)

Bioactivity Profile Similarities to Expand the Repertoire of COVID-19 Drugs. - Miquel Duran-Frigola; Martino Bertoni; Roi Blanco; Víctor Martínez; Eduardo Pauls; Víctor Alcalde; Gemma Turon; Núria Villegas; Adrià Fernández-Torras; Carles Pons; Lidia Mateo; Oriol Guitart-Pla; et al. (J. Chem. Inf. Model., 2020)

BQsupports: systematic assessment of the support and novelty of new biomedical associations. - Adrià Fernández-Torras; Martina Locatelli; Martino Bertoni; Patrick Aloy (Bioinform., 2023)