K-mer clustering algorithm using a MapReduce approach. - Chang Sik Kim; Martyn D. Winn; Vipin Sachdeva; Kirk E. Jordan (BIBM, 2014)

Parallelization of the Trinity Pipeline for De Novo Transcriptome Assembly. - Vipin Sachdeva; Chang Sik Kim; Kirk E. Jordan; Martyn D. Winn (IPDPS Workshops, 2014)

K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity. - Chang Sik Kim; Martyn D. Winn; Vipin Sachdeva; Kirk E. Jordan (BMC Bioinform., 2017)

Indexed variation graphs for efficient and accurate resistome profiling. - Will P. M. Rowe; Martyn D. Winn (Bioinform., 2018)

A Fast Machine Learning Workflow for Rapid Phenotype Prediction from Whole Shotgun Metagenomes. - Anna Paola Carrieri; Will P. M. Rowe; Martyn D. Winn; Edward O. Pyzer-Knapp (AAAI, 2019)