Defining an Open Metadata Framework for Proteomics: The PROMIS Project. - W. John MacMullen; Mary C. Parmelee; David A. Fenstermacher; Bradley M. Hemminger (AMIA, 2002)

A net-centric metadata framework for service-oriented environments. - Mary C. Parmelee; Deborah Nichols; Leo Obrst (Int. J. Metadata Semant. Ontologies, 2009)

Toward an Ontology Architecture for Cyber-Security Standards. - Mary C. Parmelee (STIDS, 2010)

Adventures in the Art of Enterprise Artificial Intelligence Transformation. - Mary C. Parmelee (ISWC (Demos/Industry), 2020)