Vision as a compensatory mechanism for disturbance rejection in upwind flight. - Michael B. Reiser; J. Sean Humbert; Mary J. Dunlop; Domitilla Del Vecchio; Richard M. Murray; Michael H. Dickinson (ACC, 2004)

Robustness in gene circuits: clustering of functional responses. - Mary J. Dunlop; Michael E. Wall (ACC, 2005)

A Multi-Model Approach to Identification of Biosynthetic Pathways. - Mary J. Dunlop; Elisa Franco; Richard M. Murray (ACC, 2007)

Analysis of a Digital Clock for Molecular Computing. - Johan Ugander; Mary J. Dunlop; Richard M. Murray (ACC, 2007)

Modeling suggests that gene circuit architecture controls phenotypic variability in a bacterial persistence network. - Rachel S. Koh; Mary J. Dunlop (BMC Syst. Biol., 2012)

Tunable Stochastic Pulsing in the Escherichia coli Multiple Antibiotic Resistance Network from Interlinked Positive and Negative Feedback Loops. - Javier Garcia-Bernardo; Mary J. Dunlop (PLoS Comput. Biol., 2013)

Customized Regulation of Diverse Stress Response Genes by the Multiple Antibiotic Resistance Activator MarA. - Nicholas A. Rossi; Mary J. Dunlop (PLoS Comput. Biol., 2017)

Active degradation of MarA controls coordination of its downstream targets. - Nicholas A. Rossi; Thierry Mora; Aleksandra M. Walczak; Mary J. Dunlop (PLoS Comput. Biol., 2018)

DeLTA: Automated cell segmentation, tracking, and lineage reconstruction using deep learning. - Jean-Baptiste Lugagne; Haonan Lin; Mary J. Dunlop (PLoS Comput. Biol., 2020)

DeLTA 2.0: A deep learning pipeline for quantifying single-cell spatial and temporal dynamics. - Owen M. O'Connor; Razan N. Alnahhas; Jean-Baptiste Lugagne; Mary J. Dunlop (PLoS Comput. Biol., 2022)

Generating information-dense promoter sequences with optimal string packing. - Virgile Andréani; Eric J. South; Mary J. Dunlop (PLoS Comput. Biol., 2024)