LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters. - Mary K. Kuhner (Bioinform., 2006)

Joint Inference of Identity by Descent Along Multiple Chromosomes from Population Samples. - Chaozhi Zheng; Mary K. Kuhner; Elizabeth A. Thompson (J. Comput. Biol., 2014)

Bulk Genotyping of Biopsies Can Create Spurious Evidence for Hetereogeneity in Mutation Content. - Rumen Kostadinov; Carlo C. Maley; Mary K. Kuhner (PLoS Comput. Biol., 2016)

CNValidator: validating somatic copy-number inference. - Lucian P. Smith; Jon A Yamato; Mary K. Kuhner (Bioinform., 2019)