Exploring Protein Functional Relationships Using Genomic Information and Data Mining Techniques. - Jack Y. Yang; Mary Qu Yang; Okan K. Ersoy (ICANN, 2003)

Sequential bifurcation Approach to Learning protein Functional Classes. - Mary Qu Yang; Okan K. Ersoy; Jack Y. Yang (Advances in Bioinformatics and Its Applications, 2005)

IUP: Intrinsically Unstructured Protein predictor - A software tool for analyzing polypeptide sequences. - Mary Qu Yang; Jack Y. Yang (BIBE, 2006)

Assessing protein function using a combination of supervised and unsupervised learning. - Jack Y. Yang; Mary Qu Yang (BIBE, 2006)

Identification of Intrinsically Unstructured Regions in Proteins Using Primary Structure. - Mary Qu Yang; Jack Y. Yang (BIOCOMP, 2006)

Learning from Sequences with Determining Correlation between Transmembrane and Protein Disorder. - Jack Y. Yang; Mary Qu Yang (BIOCOMP, 2006)

Feature Selection and Partial Least Squares Based Dimension Reduction for Tumor Classification. - Hualong Bu; Guo-Zheng Li 001; Xue-Qiang Zeng; Jack Y. Yang; Mary Qu Yang (BIBE, 2007)

Ensemble of Probabilistic Neural Networks for Protein Fold Recognition. - Yuehui Chen; Xueqin Zhang; Mary Qu Yang; Jack Y. Yang (BIBE, 2007)

Support Vector Regression with Feature Selection for the Multivariate Calibration of Spectrofluorimetric Determination of Aromatic Amino Acids. - Guo-Zheng Li 001; Hao-Hua Meng; Mary Qu Yang; Jack Y. Yang (BIBE, 2007)

Partial Least Squares Based Dimension Reduction with Gene Selection for Tumor Classification. - Guo-Zheng Li 001; Xue-Qiang Zeng; Jack Y. Yang; Mary Qu Yang (BIBE, 2007)

An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments. - Mehdi Pirooznia; Arun Rawat; Jack Y. Yang; Mary Qu Yang; Ping Gong 001; Edward J. Perkins; Youping Deng (BIBE, 2007)

Promoter studies in the human genome: one perspective on an unfinished story. - Mary Qu Yang; Laura Elnitski (BIBE, 2007)

An Overview of Bidirectional Promoters. - Mary Qu Yang; Laura Elnitski (BIBE, 2007)

Non-Monotonic Radio-Sensitivity over Tumor Volumes on Adjuvant Radio Therapy A New Insight on Cell Killing and Modeling. - Jack Y. Yang; Andrzej Niemierko; Mary Qu Yang; Youping Deng (BIBE, 2007)

An Investigation into the Feasibility of Detecting Microscopic Disease Using Machine Learning. - Mary Qu Yang; Jack Y. Yang (BIBE, 2007)

Orthology and Multiple Class Prediction of Functional Elements in the Human Genome. - Mary Qu Yang; Laura Elnitski (BIOCOMP, 2007)

Classification of Brain Glioma by Using Neural Networks Ensemble with Multi-Task Learning. - Jack Y. Yang; Guo-Zheng Li 001; Li-Xin Liu; Mary Qu Yang (BIOCOMP, 2007)

The 2007 World Congress in Computer Science, Computer Engineering, and Applied Computing Invited Banquet Keynote Lecture: Using Bioinformatics and Machine Learning to Predict Potential Malignancies. - Jack Y. Yang; Mary Qu Yang (BIOCOMP, 2007)

Predicting Tumor Malignancies using Combined Computational Intelligence, Bioinformatics and Laboratory Molecular Biology Approaches. - Jack Y. Yang; Andrzej Niemierko; Mary Qu Yang; Zuojie Luo; Jianling Li (CIBCB, 2007)

Feature Selection for Co-Training: A QSAR Study. - Guo-Zheng Li 001; Dan Li; Wen-Cong Lu; Jack Y. Yang; Mary Qu Yang (IC-AI, 2007)

Asymmetric Bagging and Feature Selection for Activities Prediction of Drug Molecules. - Guo-Zheng Li 001; Hao-Hua Meng; Mary Qu Yang; Jack Y. Yang (IMSCCS, 2007)

Rigorous Mapping of Orthologous Bidirectional Promoters in Vertebrates Defines their Evolutionary History. - Mary Qu Yang; James Taylor; Laura Elnitski (IMSCCS, 2007)

Invited Talk: A Computational Study of Bidirectional Promoters in the Human Genome. - Mary Qu Yang; Laura Elnitski (ISBRA, 2007)

Classification of proteins multiple-labelled and single-labelled with protein functional classes. - Mary Qu Yang; Jack Y. Yang; Okan K. Ersoy (Int. J. Gen. Syst., 2007)

Comprehensive Annotation of Bidirectional Promoters Identifies Co-Regulation among Breast and Ovarian Cancer Genes. - Mary Qu Yang; Laura M. Koehly; Laura Elnitski (PLoS Comput. Biol., 2007)

Word-Based Characterization of the Bidirectional Promoters from the Human DNA-Repair Pathway. - Jens Lichtenberg; Edwin Jacox; Mary Qu Yang; Laura Elnitski; Lonnie R. Welch (BIOCOMP, 2008)

Abnormal Traffic Detection in VoIP by Using Machine Learning Approaches. - Yuhai Liu; Guo-Zheng Li 001; Wenqian Yu; Jianqun Xu; Jack Y. Yang; Mary Qu Yang (IC-AI, 2008)

A Novel Metric for Redundant Gene Elimination Based on Discriminative Contribution. - Xue-Qiang Zeng; Guo-Zheng Li 001; Jack Y. Yang; Mary Qu Yang (ISBRA, 2008)

High Performance Computing and Computational Intelligence: Link to the Translational Medicine and Personalized Healthcare - Banquet Keynote Lecture. - Jack Y. Yang; Mary Qu Yang; Hamid R. Arabnia (PDPTA, 2008)

Preface. - Frank Emmert-Streib; Hamid R. Arabnia; Mary Qu Yang (Appl. Artif. Intell., 2008)

Asymmetric bagging and feature selection for activities prediction of drug molecules. - Guo-Zheng Li 001; Hao-Hua Meng; Wen-Cong Lu; Jack Y. Yang; Mary Qu Yang (BMC Bioinform., 2008)

Comparative analyses of bidirectional promoters in vertebrates. - Mary Qu Yang; James Taylor; Laura Elnitski (BMC Bioinform., 2008)

Dimension reduction with redundant gene elimination for tumor classification. - Xue-Qiang Zeng; Guo-Zheng Li 001; Jack Y. Yang; Mary Qu Yang; Gengfeng Wu (BMC Bioinform., 2008)

2009 and beyond: the decade of personalised medicine. - Pan Du; Simon M. Lin; Mary Qu Yang; Jack Y. Yang (Int. J. Comput. Biol. Drug Des., 2008)

Improving prediction accuracy of drug activities by utilising unlabelled instances with feature selection. - Guo-Zheng Li 001; Jack Y. Yang; Wen-Cong Lu; Dan Li; Mary Qu Yang (Int. J. Comput. Biol. Drug Des., 2008)

Feature selection for the imbalanced QSAR problems by using EasyEnsemble. - Tian-Yu Liu; Guo-Zheng Li 001; Jack Y. Yang; Mary Qu Yang (Int. J. Comput. Biol. Drug Des., 2008)

Identification of Intrinsically Unstructured Proteins using hierarchical classifier. - Jack Y. Yang; Mary Qu Yang (Int. J. Data Min. Bioinform., 2008)

Functional informatics and personalised medicine are key synergistic components of translational medicine. - Nazeih M. Botros; Ying Chen; Mary Qu Yang (Int. J. Funct. Informatics Pers. Medicine, 2008)

New statistical learning theory paradigms adapted to breast cancer diagnosis/classification using image and non-image clinical data. - Walker H. Land Jr.; John J. Heine; Thomas Raway; Alda Mizaku; Nataliya Kovalchuk; Jack Y. Yang; Mary Qu Yang (Int. J. Funct. Informatics Pers. Medicine, 2008)

Feature selection for gene function prediction using multi-labelled lazy learning. - Yuhai Liu; Guo-Zheng Li 001; Hongyu Zhang 002; Mary Qu Yang; Jack Y. Yang (Int. J. Funct. Informatics Pers. Medicine, 2008)

Transforming medicine: functional informatics, drug design, and personalised healthcare. - Jack Y. Yang; Mary Qu Yang (Int. J. Funct. Informatics Pers. Medicine, 2008)

A Personalized Traditional Chinese Medicine System in the case of Cai's gynecology. - Mingyu You; Guo-Zheng Li 001; Xue-Qiang Zeng; Lei Ge; Lijuan Bi; Suying Huang; Mary Qu Yang; Jack Y. Yang (Int. J. Funct. Informatics Pers. Medicine, 2008)

Ensemble Voting System for Multiclass protein fold Recognition. - Yuehui Chen; Feng Chen; Jack Y. Yang; Mary Qu Yang (Int. J. Pattern Recognit. Artif. Intell., 2008)

Redundant Gene Selection Based on Particle Swarm Optimization. - Su-Fen Chen; Xue-Qiang Zeng; Guo-Zheng Li 001; Jack Y. Yang; Mary Qu Yang (IJCBS, 2009)

Next Generation Sequence Analysis Using Genetic Algorithms on Multi-core Technology. - Kaiqi Xiong; Sang C. Suh; Mary Qu Yang; Jack Y. Yang; Hamid R. Arabnia (IJCBS, 2009)

The Impact of Supercomputing in the Next Generation Sequencing Data Mining. - Mary Qu Yang; Sang C. Suh; Kaiqi Xiong; Jack Y. Yang; Hamid R. Arabnia (PDPTA, 2009)

Promoting inter/multidisciplinary education and research in bioinformatics, systems biology and intelligent computing. - Mary Qu Yang; Andrzej Niemierko; Jack Y. Yang; Yufang Jin (Int. J. Comput. Biol. Drug Des., 2009)

Lecture notes: 2010 and beyond, the decade of high-performance computing for the next-generation sequence analysis. - Mary Qu Yang; Jack Y. Yang (Int. J. Comput. Biol. Drug Des., 2009)

Irrelevant gene elimination for Partial Least Squares based Dimension Reduction by using feature probes. - Xue-Qiang Zeng; Guo-Zheng Li 001; Gengfeng Wu; Jack Y. Yang; Mary Qu Yang (Int. J. Data Min. Bioinform., 2009)

Editorial review: engineering modelling and intelligent computing are synergistic in translational medicine research. - Ying Chen; Nazeih M. Botros; Mary Qu Yang (Int. J. Funct. Informatics Pers. Medicine, 2009)

An Enhanced Lipschitz Embedding Classifier for Multi-Emotion Speech Analysis. - Mingyu You; Guo-Zheng Li 001; Jack Y. Yang; Mary Qu Yang (Int. J. Pattern Recognit. Artif. Intell., 2009)

Combining support vector regression with feature selection for multivariate calibration. - Guo-Zheng Li 001; Hao-Hua Meng; Mary Qu Yang; Jack Y. Yang (Neural Comput. Appl., 2009)

Feature selection for semi-supervised multi-label learning with application to gene function analysis. - Guo-Zheng Li 001; Mingyu You; Lei Ge; Jack Y. Yang; Mary Qu Yang (BCB, 2010)

BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features. - Liangjiang Wang; Caiyan Huang; Mary Qu Yang; Jack Y. Yang (BMC Syst. Biol., 2010)

3D Protein structure prediction with genetic tabu search algorithm. - Xiaolong Zhang 002; Ting Wang; Huiping Luo; Jack Y. Yang; Youping Deng; Jinshan Tang; Mary Qu Yang (BMC Syst. Biol., 2010)

A new statistical approach to combining p-values using gamma distribution and its application to genome-wide association study. - Zhongxue Chen; William Yang; Qingzhong Liu; Jack Y. Yang; Jing Li 003; Mary Yang (BMC Bioinform., 2014)

Developing discriminate model and comparative analysis of differentially expressed genes and pathways for bloodstream samples of diabetes mellitus type 2. - Chang Liu; Lili Lu; Quan Kong; Yan Li; Haihua Wu; William Yang; Shandan Xu; Xinyu Yang; Xiaolei Song; Jack Y. Yang; Mary Qu Yang; Youping Deng (BMC Bioinform., 2014)

Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. - Jack Y. Yang; A. Keith Dunker; Jun S. Liu; Xiang Qin; Hamid R. Arabnia; William Yang; Andrzej Niemierko; Zhongxue Chen; Zuojie Luo; Liangjiang Wang; Yunlong Liu; Dong Xu; et al. (BMC Bioinform., 2014)

Orthology-driven mapping of bidirectional promoters in human and mouse genomes. - Mary Qu Yang; Laura Elnitski (BMC Bioinform., 2014)

Identification of genes and pathways involved in kidney renal clear cell carcinoma. - William Yang; Kenji Yoshigoe; Xiang Qin; Jun S. Liu; Jack Y. Yang; Andrzej Niemierko; Youping Deng; Yunlong Liu; A. Keith Dunker; Zhongxue Chen; Liangjiang Wang; Dong Xu; et al. (BMC Bioinform., 2014)

Developing automated pipeline for identifying disease-related genomic variants. - Chad Hayden; Dan Li; Kenji Yoshigoe; Mary Yang (BIBM, 2015)

The upregulation of Myb and Peg3 may mediate EGCG inhibition effect on mouse lung adenocarcinoma. - Hong Zhou; Joseph Manthey; Ekaterina Lioutikova; Mary Qu Yang; William Yang; Kenji Yoshigoe; Hong Wang (BIBM, 2015)

A hybrid iterative approach for microarray missing value estimation. - Chong He; Changbo Zhao; Guo-Zheng Li 001; Wei Zhu; William Yang; Mary Qu Yang (BIBM, 2016)

Comparing of feature selection and classification methods on report-based subhealth data. - Li Huang; Shixing Yan; Jiamin Yuan; Zhiya Zuo; Fuping Xu; Yanzhao Lin; Mary Qu Yang; Zhimin Yang; Guo-Zheng Li 001 (BIBM, 2016)

Prediction of the efficacy of Wuji Pills by machine learning methods. - Haiqing Li; Guo-Zheng Li 001; William Yang; Ying Chen; Xiaoxin Zhu; Mary Qu Yang (BIBM, 2016)

Visualized analysis of incomplete TCM meridian conductance data. - Jiamin Yuan; Jiachang Chen; Li Huang; Fuping Xu; Mary Qu Yang; Shixing Yan; Guo-Zheng Li 001; Zhimin Yang (BIBM, 2016)

Byzantine fault tolerance for collaborative editing with commutative operations. - Wenbing Zhao 001; Mamdouh Babi; William Yang; Xiong Luo; Yueqin Zhu; Jack Y. Yang; Chaomin Luo; Mary Yang (EIT, 2016)

High-throughput state-machine replication using software transactional memory. - Wenbing Zhao 001; William Yang; Honglei Zhang; Jack Y. Yang; Xiong Luo; Yueqin Zhu; Mary Yang; Chaomin Luo (J. Supercomput., 2016)

Protein-Protein Interaction Extraction Using Attention-Based Convolution Neural Networks. - Hao Zhang; Mary Qu Yang; Xiaoyue Feng; William Yang; Weida Tong; Renchu Guan (BCB, 2017)

Relation discovery and hotspots analysis on diabetes mellitus and obesity with representation model. - Guannan He; Yanchun Liang 001; Yan Chen; William Yang; Jun S. Liu; Mary Qu Yang; Renchu Guan (BIBM, 2017)

Comprehensive analysis of pulmonary adenocarcinoma in situ (AIS) revealed new insights into lung cancer progression. - Dan Li; William Yang; Yifan Zhang; Jack Y. Yang; Weida Tong; Renchu Guan; Mary Qu Yang (BIBM, 2017)

Invited talk: Developing deep multi-source intelligent learning that facilitates the advancement of single cell genomics research. - William Yang; Sherman Morton Weissman; Renchu Guan; Jialing Zhang; Allon Canaan; Mary Qu Yang (BIBM, 2017)

Toward precision breast cancer survival prediction utilizing combined whole genome-wide expression and somatic mutation analysis. - Yifan Zhang; William Yang; Dan Li; Jack Y. Yang; Renchu Guan; Weida Tong; Mary Qu Yang (BIBM, 2017)

Identification and characterization of conserved lncRNAs in human and rat brain. - Dan Li; Mary Qu Yang (BMC Bioinform., 2017)

Dependability enhancing mechanisms for integrated clinical environments. - Wenbing Zhao 001; Mary Qu Yang (J. Supercomput., 2017)

Correction to: Identification and characterization of conserved lncRNAs in human and rat brain. - Dan Li; Mary Qu Yang (BMC Bioinform., 2018)

Co-expression of long non-coding RNAs and autism risk genes in the developing human brain. - Steven B. Cogill; Anand K. Srivastava; Mary Qu Yang; Liangjiang Wang (BMC Syst. Biol., 2018)

Increased AURKA promotes cell proliferation and predicts poor prognosis in bladder cancer. - Mengjie Guo; Sicheng Lu; Hongming Huang; Yaohui Wang; Mary Qu Yang; Ye Yang; Zhimin Fan; Bin Jiang; Youping Deng (BMC Syst. Biol., 2018)

A hotspots analysis-relation discovery representation model for revealing diabetes mellitus and obesity. - Guannan He; Yanchun Liang 001; Yan Chen; William Yang; Jun S. Liu; Mary Qu Yang; Renchu Guan (BMC Syst. Biol., 2018)

The emerging role of microRNA-4487/6845-3p in Alzheimer's disease pathologies is induced by Aβ25-35 triggered in SH-SY5Y cell. - Ling Hu; Rong Zhang; Qiong Yuan; Yinping Gao; Mary Qu Yang; Chunxiang Zhang; Jiankun Huang; Yufei Sun; William Yang; Jack Y. Yang; Zhen-li Min; Jing Cheng; et al. (BMC Syst. Biol., 2018)

Systems biology analysis reveals new insights into invasive lung cancer. - Dan Li; William Yang; Carolyn Arthur; Jun S. Liu; Carolina Cruz-Niera; Mary Qu Yang (BMC Syst. Biol., 2018)

MISC: missing imputation for single-cell RNA sequencing data. - Mary Qu Yang; Sherman Morton Weissman; William Yang; Jialing Zhang; Allon Canaan; Renchu Guan (BMC Syst. Biol., 2018)

A Knowledge Base Completion Model Based on Path Feature Learning. - Xixun Lin; Yanchun Liang 001; Limin Wang 011; Xu Wang; Mary Qu Yang; Renchu Guan (Int. J. Comput. Commun. Control, 2018)

Correction to: Dependability enhancing mechanisms for integrated clinical environments. - Wenbing Zhao 001; Mary Qu Yang (J. Supercomput., 2018)

Characterizing Mutually Exclusive Driver Mutations in Pan-Cancer. - Yifan Zhang; William Yang; Jun S. Liu; Mary Qu Yang (BIBM, 2019)

Correction to: MISC: missing imputation for single-cell RNA sequencing data. - Mary Qu Yang; Sherman Morton Weissman; William Yang; Jialing Zhang; Allon Canaan; Renchu Guan (BMC Syst. Biol., 2019)

Feature space learning model. - Renchu Guan; Xu Wang; Maurizio Marchese; Mary Qu Yang; Yanchun Liang 001; Chen Yang 001 (J. Ambient Intell. Humaniz. Comput., 2019)

Image Captioning with Bidirectional Semantic Attention-Based Guiding of Long Short-Term Memory. - Pengfei Cao; Zhongyi Yang; Liang Sun 003; Yanchun Liang 001; Mary Qu Yang; Renchu Guan (Neural Process. Lett., 2019)

Missing Value Recovery for Single Cell RNA Sequencing Data. - Wenjuan Zhang; William Yang; John R. Talburt; Sherman Morton Weissman; Mary Qu Yang (CSCI, 2021)