TFmiR: a web server for constructing and analyzing disease-specific transcription factor and miRNA co-regulatory networks. - Mohamed Hamed; Christian Spaniol; Maryam Nazarieh; Volkhard Helms (Nucleic Acids Res., 2015)

Identification of key player genes in gene regulatory networks. - Maryam Nazarieh; Andreas Wiese; Thorsten Will; Mohamed Hamed; Volkhard Helms (BMC Syst. Biol., 2016)

Randomization Strategies Affect Motif Significance Analysis in TF-miRNA-Gene Regulatory Networks. - Sepideh Sadegh; Maryam Nazarieh; Christian Spaniol; Volkhard Helms (J. Integr. Bioinform., 2017)

Understanding regulatory mechanisms underlying stem cells helps to identify cancer biomarkers. - Maryam Nazarieh (2018)

Topology Consistency of Disease-specific Differential Co-regulatory Networks. - Maryam Nazarieh; Hema Sekhar Reddy Rajula; Volkhard Helms (BMC Bioinform., 2019)

TFmiR2: constructing and analyzing disease-, tissue- and process-specific transcription factor and microRNA co-regulatory networks. - Maryam Nazarieh; Mohamed Hamed; Christian Spaniol; Thorsten Will; Volkhard Helms (Bioinform., 2020)

Identification of Biomarkers Controlling Cell Fate In Blood Cell Development. - Maryam Nazarieh; Volkhard Helms; Marc P. Hoeppner; Andre Franke (CoRR, 2020)

Identification of Biomarkers Controlling Cell Fate In Blood Cell Development. - Maryam Nazarieh; Marc P. Hoeppner; Volkhard Helms (Frontiers Bioinform., 2021)