Multimodal Whole Brain Registration: MRI and High Resolution Histology. - Maryana Alegro; Edson Amaro Júnior; Burlen Loring; Helmut Heinsen; Eduardo Alho; Lilla Zöllei; Daniela Ushizima; Lea T. Grinberg (CVPR Workshops, 2016)

Portable Learning Environments for Hands-On Computational Instruction: Using Container- and Cloud-Based Technology to Teach Data Science. - Chris Holdgraf; Aaron Culich; Ariel Rokem; Fatma Deniz; Maryana Alegro; Daniela Ushizima (PEARC, 2017)

Automating Whole Brain Histology to MRI Registration: Implementation of a Computational Pipeline. - Maryana Alegro; Eduardo J. L. Alho; Maria da Graça Morais Martin; Lea Tenenholz Grinberg; Helmut Heinsen; Roseli de Deus Lopes; Edson Amaro Jr.; Lilla Zöllei (CoRR, 2019)

Deep learning for Alzheimer's disease: Mapping large-scale histological tau protein for neuroimaging biomarker validation. - Daniela Ushizima; Yuheng Chen; Maryana Alegro; Dulce Ovando; Rana Eser; WingHung Lee; Kinson Poon; Anubhav Shankar; Namrata Kantamneni; Shruti Satrawada; Edson Amaro Júnior; Helmut Heinsen; et al. (NeuroImage, 2022)

Multi-omics Prediction from High-content Cellular Imaging with Deep Learning. - Rahil Mehrizi; Arash Mehrjou; Maryana Alegro; Yi Zhao; Benedetta Carbone; Carl Fishwick; Johanna Vappiani; Jing Bi; Siobhan Sanford; Hakan Keles; Marcus Bantscheff; Cuong Nguyen; et al. (CoRR, 2023)