Can Complex Cellular Processes be Governed by Simple Linear Rules? - Kumar Selvarajoo; Masaru Tomita; Masa Tsuchiya (J. Bioinform. Comput. Biol., 2009)

Single-Cell Reprogramming in Mouse Embryo Development through a Critical Transition State. - Masa Tsuchiya; Alessandro Giuliani; Kenichi Yoshikawa (Entropy, 2017)

Self-Organization of Genome Expression from Embryo to Terminal Cell Fate: Single-Cell Statistical Mechanics of Biological Regulation. - Alessandro Giuliani; Masa Tsuchiya; Kenichi Yoshikawa (Entropy, 2018)