Multiple Tree Alignment with Weights Applied to Carbohydrates to Extract Binding Recognition Patterns. - Masae Hosoda; Yukie Akune; Kiyoko F. Aoki-Kinoshita (PRIB, 2012)

Development and application of an algorithm to compute weighted multiple glycan alignments. - Masae Hosoda; Yukie Akune; Kiyoko F. Aoki-Kinoshita (Bioinform., 2017)

Prediction and Analysis of Drug-Glycoprotein Interactions with Mutual Attention Neural Networks. - Eiji Shinkawa; Koichi Nagatsuka; Yuki Murata; Tamiko Ono; Masae Hosoda; Kiyoko F. Aoki-Kinoshita; Masayasu Atsumi (SCIS/ISIS, 2022)

ProfileOTMM: Automated Glycan Motif Analysis Through Pattern Recognition of Tree Structures. - Kento Totsuka; Masae Hosoda; Kiyoko F. Aoki-Kinoshita; Norihiko Shinomiya (TENCON, 2024)

Expanding the concept of ID conversion in TogoID by introducing multi-semantic and label features. - Shuya Ikeda; Kiyoko F. Aoki-Kinoshita; Hirokazu Chiba; Susumu Goto; Masae Hosoda; Shuichi Kawashima; Jin-Dong Kim; Yuki Moriya; Tazro Ohta; Hiromasa Ono; Terue Takatsuki; Yasunori Yamamoto; et al. (J. Biomed. Semant., 2025)