Creating 3-dimensional graph structures with DNA. - Natasa Jonoska; Stephen A. Karl; Masahico Saito (DNA Based Computers, 1997)

Boundary Components of Thickened Graphs. - Natasa Jonoska; Masahico Saito (DNA, 2001)

Algebraic and Topological Models for DNA Recombinant Processes. - Natasa Jonoska; Masahico Saito (Developments in Language Theory, 2004)

Tangle Embeddings and Quandle Cocycle Invariants. - Kheira Ameur; Mohamed Elhamdadi; Tom Rose; Masahico Saito; Chad Smudde (Exp. Math., 2008)

Strategies for RNA-Guided DNA Recombination. - Angela Angeleska; Natasa Jonoska; Masahico Saito; Laura F. Landweber (Algorithmic Bioprocesses, 2009)

DNA recombination through assembly graphs. - Angela Angeleska; Natasa Jonoska; Masahico Saito (Discret. Appl. Math., 2009)

DNA Rearrangements through Spatial Graphs. - Natasa Jonoska; Masahico Saito (CiE, 2010)

Rewriting rule chains modeling DNA rearrangement pathways. - Angela Angeleska; Natasa Jonoska; Masahico Saito (Theor. Comput. Sci., 2012)

Four-regular graphs with rigid vertices associated to DNA recombination. - Jonathan Burns; Egor Dolzhenko; Natasa Jonoska; Tilahun Muche; Masahico Saito (Discret. Appl. Math., 2013)

Genus Ranges of 4-Regular Rigid Vertex Graphs. - Dorothy Buck; Egor Dolzhenko; Natasa Jonoska; Masahico Saito; Karin Valencia (Electron. J. Comb., 2015)

Patterns and Distances in Words Related to DNA Rearrangement. - Natasa Jonoska; Lukas Nabergall; Masahico Saito (Fundam. Informaticae, 2017)

Transformations on Double Occurrence Words Motivated by DNA Rearrangement. - Daniel A. Cruz; Margherita Maria Ferrari; Natasa Jonoska; Lukas Nabergall; Masahico Saito (CoRR, 2018)

Algebraic Systems Motivated by DNA Origami. - James Garrett; Natasa Jonoska; Hwee Kim; Masahico Saito (CAI, 2019)

DNA Origami Words and Rewriting Systems. - James Garrett; Natasa Jonoska; Hwee Kim; Masahico Saito (UCNC, 2019)

The Topology of Scaffold Routings on Non-Spherical Mesh Wireframes. - Abdulmelik Mohammed; Natasa Jonoska; Masahico Saito (DNA, 2020)

Insertions Yielding Equivalent Double Occurrence Words. - Daniel A. Cruz; Margherita Maria Ferrari; Natasa Jonoska; Lukas Nabergall; Masahico Saito (Fundam. Informaticae, 2020)

Symbol Separation in Double Occurrence Words. - Natasa Jonoska; Masahico Saito; Hwee Kim; Brad Mostowski (Int. J. Found. Comput. Sci., 2020)

DNA origami words, graphical structures and their rewriting systems. - James Garrett; Natasa Jonoska; Hwee Kim; Masahico Saito (Nat. Comput., 2021)