Molecular dynamics simulation using coarse-grained model to study protein function and beyond. - Mitsunori Takano; Hironori K. Nakamura; Junichi Higo; Masaki Sasai (IEEE Congress on Evolutionary Computation, 2003)

On the model granularity to simulate protein dynamics: A biological physics view on biomolecular computing. - Mitsunori Takano; Junichi Higo; Hironori K. Nakamura; Masaki Sasai (Nat. Comput., 2004)

Chemotaxis of a eukaryotic cell in complex gradients of chemoattractants. - Shin I. Nishimura; Masaki Sasai (Artif. Life Robotics, 2005)

Intelligent locomotion of eukaryotic cells. - Shin I. Nishimura; Masaki Sasai (ALIFE, 2008)

Cortical Factor Feedback Model for Cellular Locomotion and Cytofission. - Shin I. Nishimura; Masahiro Ueda; Masaki Sasai (PLoS Comput. Biol., 2009)

Stable, Precise, and Reproducible Patterning of Bicoid and Hunchback Molecules in the Early Drosophila Embryo. - Yurie Okabe-Oho; Hiroki Murakami; Suguru Oho; Masaki Sasai (PLoS Comput. Biol., 2009)

Time Scales in Epigenetic Dynamics and Phenotypic Heterogeneity of Embryonic Stem Cells. - Masaki Sasai; Yudai Kawabata; Koh Makishi; Kazuhito Itoh; Tomoki P. Terada (PLoS Comput. Biol., 2013)

Coupling of Lever Arm Swing and Biased Brownian Motion in Actomyosin. - Qing-Miao Nie; Akio Togashi; Takeshi N. Sasaki; Mitsunori Takano; Masaki Sasai; Tomoki P. Terada (PLoS Comput. Biol., 2014)

VS-APPLE: A Virtual Screening Algorithm Using Promiscuous Protein-Ligand Complexes. - Tatsuya Okuno; Koya Kato; Tomoki P. Terada; Masaki Sasai; George Chikenji (J. Chem. Inf. Model., 2015)

Role of the reaction-structure coupling in temperature compensation of the KaiABC circadian rhythm. - Masaki Sasai (PLoS Comput. Biol., 2022)