A Chemical-Distance-Based Test for Positive Darwinian Selection. - Tal Pupko; Roded Sharan; Masami Hasegawa; Ron Shamir; Dan Graur (WABI, 2001)

CONSEL: for assessing the confidence of phylogenetic tree selection. - Hidetoshi Shimodaira; Masami Hasegawa (Bioinform., 2001)

A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families. - Tal Pupko; Itsik Pe'er; Masami Hasegawa; Dan Graur; Nir Friedman (Bioinform., 2002)

A viral sampling design for testing the molecular clock and for estimating evolutionary rates and divergence times. - Tae-Kun Seo; Jeffrey L. Thorne; Masami Hasegawa; Hirohisa Kishino (Bioinform., 2002)

Computational simulation of interactions between SARS coronavirus spike mutants and host species-specific receptors. - Yuan Zhang; Nan Zheng; Peng Nan; Ying Cao; Masami Hasegawa; Yang Zhong (Comput. Biol. Chem., 2007)