Prediction of Protein-Protein Interaction Sites Using Only Sequence Information and Using Both Sequence and Structural Information. - Masanori Kakuta; Shugo Nakamura; Kentaro Shimizu (Inf. Media Technol., 2008)

Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines. - Seizi Someya; Masanori Kakuta; Mizuki Morita; Kazuya Sumikoshi; Cao Wei; Ge Zhenyi; Osamu Hirose; Shugo Nakamura; Tohru Terada; Kentaro Shimizu (Adv. Bioinformatics, 2010)

Extreme Big Data (EBD): Next Generation Big Data Infrastructure Technologies Towards Yottabyte/Year. - Satoshi Matsuoka; Hitoshi Sato; Osamu Tatebe; Michihiro Koibuchi; Ikki Fujiwara; Shuji Suzuki; Masanori Kakuta; Takashi Ishida 002; Yutaka Akiyama; Toyotaro Suzumura; Koji Ueno; Hiroki Kanezashi; et al. (Supercomput. Front. Innov., 2014)

Faster sequence homology searches by clustering subsequences. - Shuji Suzuki; Masanori Kakuta; Takashi Ishida 002; Yutaka Akiyama (Bioinform., 2015)

Development of Computational Pipeline Software for Genome/Exome Analysis on the K Computer. - Kento Aoyama; Masanori Kakuta; Yuri Matsuzaki; Takashi Ishida 002; Masahito Ohue; Yutaka Akiyama (Supercomput. Front. Innov., 2020)