DNAAlignEditor: DNA alignment editor tool. - Hector Sanchez-Villeda; Steven G. Schroeder; Sherry Flint-Garcia; Katherine E. Guill; Masanori Yamasaki; Michael D. McMullen (BMC Bioinform., 2008)

Prediction of regional goods demand incorporating the effect of weather. - Takuya Watanabe 002; Hiroaki Muroi; Motoki Naruke; Kyoto Yono; Gen Kobayashi; Masanori Yamasaki (IEEE BigData, 2016)

MKDESIGNER and TASEQ: a set of tools for plant genotyping by targeted amplicon sequencing. - Koki Chigira; Masanori Yamasaki; Taiichiro Ookawa (BMC Bioinform., 2025)