Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data. - Chao Cheng; Koon-Kiu Yan; Woochang Hwang; Jiang Qian; Nitin Bhardwaj; Joel S. Rozowsky; Zhi John Lu; Wei Niu; Pedro Alves; Masaomi Kato; Michael Snyder 001; Mark Gerstein (PLoS Comput. Biol., 2011)