MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers. - Sudhir Kumar 001; Koichiro Tamura; Masatoshi Nei (Comput. Appl. Biosci., 1994)

METREE: a program package for inferring and testing minimum-evolution trees. - Andrey Rzhetsky; Masatoshi Nei (Comput. Appl. Biosci., 1994)

MEGA2: molecular evolutionary genetics analysis software. - Sudhir Kumar 001; Koichiro Tamura; Ingrid B. Jakobsen; Masatoshi Nei (Bioinform., 2001)

ADAPTSITE: detecting natural selection at single amino acid sites. - Yoshiyuki Suzuki; Takashi Gojobori; Masatoshi Nei (Bioinform., 2001)

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. - Sudhir Kumar 001; Koichiro Tamura; Masatoshi Nei (Briefings Bioinform., 2004)

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences. - Sudhir Kumar 001; Masatoshi Nei; Joel Dudley; Koichiro Tamura (Briefings Bioinform., 2008)