Note on the End Game in Homotopy Zero Curve Tracking. - Masha Sosonkina; Layne T. Watson; David E. Stewart (ACM Trans. Math. Softw., 1996)

Scalability of Adaptive GMRES Algorithm. - Masha Sosonkina; Donald C. S. Allison; Layne T. Watson (PP, 1997)

Algorithm 777: HOMPACK90: A Suite of Fortran 90 Codes for Globally Convergent Homotopy Algorithms. - Layne T. Watson; Masha Sosonkina; Robert C. Melville; Alexander P. Morgan; Homer F. Walker (ACM Trans. Math. Softw., 1997)

Scalable Parallel Implementations of the GMRES Algorithm via Householder Reflections. - Masha Sosonkina; Donald C. S. Allison; Layne T. Watson (ICPP, 1998)

Solution of Distributed Sparse Linear Systems Using PSPARSLIB. - Yousef Saad; Masha Sosonkina (PARA, 1998)

A new adaptive GMRES algorithm for achieving high accuracy. - Maria Sosonkina; Layne T. Watson; Rakesh K. Kapania; Homer F. Walker (Numer. Linear Algebra Appl., 1998)

Parallel Sparse Linear Algebra for Homotopy Methods. - Maria Sosonkina Driver Jr. (1998)

Non-standard Parallel Solution Strategies for Distributed Sparse Linear Systems. - Yousef Saad; Masha Sosonkina (ACPC, 1999)

Enhanced Parallel Multicolor Preconditioning Techniques for Linear Systems. - Yousef Saad; Masha Sosonkina (PP, 1999)

Parallel Adaptive GMRES Implementations for Homotopy Methods. - Maria Sosonkina; Donald C. S. Allison; Layne T. Watson (SIAM J. Optim., 1999)

Distributed Schur Complement Techniques for General Sparse Linear Systems. - Yousef Saad; Maria Sosonkina (SIAM J. Sci. Comput., 1999)

Runtime Adaptation of an Iterative Linear System Solution to Distributed Environments. - Masha Sosonkina (PARA, 2000)

Preconditioning strategies for linear systems arising in tire design. - Maria Sosonkina; John T. Melson; Yousef Saad; Layne T. Watson (Numer. Linear Algebra Appl., 2000)

Design of a Tool for Providing Dynamic Network Information to an Application. - Masha Sosonkina; Gan Chen (PaCT, 2001)

pARMS: A Package for Solving General Sparse Linear Systems on Parallel Computers. - Yousef Saad; Masha Sosonkina (PPAM, 2001)

Parallelism in algebraic recursive solvers. - Zhongze Li; Yousef Saad; Masha Sosonkina (PP, 2001)

Dynamic Network Information Collectionfor Distributed Scientific Application Adaptation. - Devdatta Kulkarni; Masha Sosonkina (HiPC, 2002)

Parallel Iterative Methods in Modern Physical Applications. - Xing Cai; Yousef Saad; Masha Sosonkina (International Conference on Computational Science (2), 2002)

A Framework for Integrating Network Information into Distributed Iterative Solution of Sparse Linear Systems. - Devdatta Kulkarni; Masha Sosonkina (VECPAR, 2002)

Scalability analysis of parallel GMRES implementations. - Masha Sosonkina; Donald C. S. Allison; Layne T. Watson (Parallel Algorithms Appl., 2002)

A Numerical Study of Some Parallel Algebraic Preconditioners. - Xing Cai; Masha Sosonkina (IPDPS, 2003)

pARMS: a parallel version of the algebraic recursive multilevel solver. - Zhongze Li; Yousef Saad; Masha Sosonkina (Numer. Linear Algebra Appl., 2003)

A Hierarchical Parallel Scheme for Global Parameter Estimation in Systems Biology. - Jian He; Masha Sosonkina; Clifford A. Shaffer; John J. Tyson; Layne T. Watson; Jason W. Zwolak (IPDPS, 2004)

Packet Probing as Network Load Detection for Scientific Applications at Run-Time. - Sam Storie; Masha Sosonkina (IPDPS, 2004)

Runtime Software Techniques for Enhancing High-Performance Applications: An introduction. - Masha Sosonkina (PARA, 2004)

Adapting Distributed Scientific Applications to Run-Time Network Conditions. - Masha Sosonkina (PARA, 2004)

Using the parallel algebraic recursive multilevel solver in modern physical applications. - Masha Sosonkina; Yousef Saad; Xing Cai (Future Gener. Comput. Syst., 2004)

Co-Scheduling Parallel Electronic Structure Calculations in SMP Cluster Environments. - Nurzhan Ustemirov; Masha Sosonkina (CLUSTER, 2005)

Parallel Solvers for Flexible Approximation Schemes in Multiparticle Simulation. - Masha Sosonkina; Igor Tsukerman (International Conference on Computational Science (1), 2006)

Dynamic Algorithm Selection in Parallel GAMESS Calculations. - Nurzhan Ustemirov; Masha Sosonkina; Mark S. Gordon; Michael W. Schmidt (ICPP Workshops, 2006)

IMAGE: an approach to building standards-based enterprise grids. - Gabriel Mateescu; Masha Sosonkina (IPDPS, 2006)

EulFS : A Parallel CFD Code for the Simulation of Euler and Navier-Stokes Problems on Unstructured Grids. - Aldo Bonfiglioli; Bruno Carpentieri; Masha Sosonkina (PARA, 2006)

Algorithm 857: POLSYS_GLP - a parallel general linear product homotopy code for solving polynomial systems of equations. - Hai-Jun Su; J. Michael McCarthy; Masha Sosonkina; Layne T. Watson (ACM Trans. Math. Softw., 2006)

Integrating Performance Tools with Large-Scale Scientific Software. - Meng-Shiou Wu; Jonathan L. Bentz; Fang Peng; Masha Sosonkina; Mark S. Gordon; Ricky A. Kendall (IPDPS, 2007)

Component-based iterative methods for sparse linear systems. - J. Jones; Masha Sosonkina; Yousef Saad (Concurr. Comput. Pract. Exp., 2007)

Analysis of Goldbeter-Koshland Switch Using the Chemical Master Equation. - Jingwei Zhang 002; Layne T. Watson; Masha Sosonkina; Yang Cao 001 (BIOCOMP, 2008)

Integration of Ab Initio Nuclear Physics Calculations with Optimization Techniques. - Masha Sosonkina; Anurag Sharda; Alina Negoita; James P. Vary (ICCS (1), 2008)

Accelerating configuration interaction calculations for nuclear structure. - Philip Sternberg; Esmond G. Ng; Chao Yang 001; Pieter Maris; James P. Vary; Masha Sosonkina; Hung Viet Le (SC, 2008)

Constructing a performance database for large-scale quantum chemistry packages. - Meng-Shiou Wu; Hirotoshi Mori; Jonathan L. Bentz; Theresa L. Windus; Heather Netzloff; Masha Sosonkina; Mark S. Gordon (SpringSim, 2008)

Design and implementation of a massively parallel version of DIRECT. - Jian He; Alex Verstak; Layne T. Watson; Masha Sosonkina (Comput. Optim. Appl., 2008)

Usability levels for sparse linear algebra components. - Masha Sosonkina; Fang Liu 028; Randall Bramley (Concurr. Comput. Pract. Exp., 2008)

A partitioning algorithm for block-diagonal matrices with overlap. - Guy Antoine Atenekeng Kahou; Laura Grigori; Masha Sosonkina (Parallel Comput., 2008)

A component approach to collaborative scientific software development: Tools and techniques utilized by the Quantum Chemistry Science Application Partnership. - Joseph P. Kenny; Curtis L. Janssen; Mark S. Gordon; Masha Sosonkina; Theresa L. Windus (Sci. Program., 2008)

Benefits of Parallel I/O in Ab Initio Nuclear Physics Calculations. - Nikhil Laghave; Masha Sosonkina; Pieter Maris; James P. Vary (ICCS (1), 2009)

Electronic Structure Calculations and Adaptation Scheme in Multi-core Computing Environments. - Lakshminarasimhan Seshagiri; Masha Sosonkina; Zhao Zhang 010 (ICCS (1), 2009)

Development of high performance scientific components for interoperability of computing packages. - Teena P. Gulabani; Masha Sosonkina; Mark S. Gordon; Curtis L. Janssen; Joseph P. Kenny; Heather Netzloff; Theresa L. Windus (SpringSim, 2009)

A HPC sparse solver interface for scalable multilevel methods. - Fang Liu 028; Masha Sosonkina; Randall Bramley (SpringSim, 2009)

Parallel solution of the chemical master equation. - Jingwei Zhang 002; Masha Sosonkina; Layne T. Watson; Yang Cao 001 (SpringSim, 2009)

Performance Modeling and Analysis of a Massively Parallel Direct - Part 2. - Jian He; Alex Verstak; Masha Sosonkina; Layne T. Watson (Int. J. High Perform. Comput. Appl., 2009)

Performance Modeling and Analysis of a Massively Parallel Direct - Part 1. - Jian He; Alex Verstak; Layne T. Watson; Masha Sosonkina (Int. J. High Perform. Comput. Appl., 2009)

Algorithm 897: VTDIRECT95: Serial and parallel codes for the global optimization algorithm direct. - Jian He; Layne T. Watson; Masha Sosonkina (ACM Trans. Math. Softw., 2009)

Exploring Tuning Strategies for Quantum Chemistry Computations. - Lakshminarasimhan Seshagiri; Meng-Shiou Wu; Masha Sosonkina; Zhao Zhang 010 (Software Automatic Tuning, From Concepts to State-of-the-Art Results, 2010)

A New Approach: Component-Based Multi-physics Coupling through CCA-LISI. - Fang Liu 028; Masha Sosonkina; Randall Bramley (ICCSA (2), 2010)

Enhancing adaptive middleware for quantum chemistry applications with a database framework. - Lakshminarasimhan Seshagiri; Meng-Shiou Wu; Masha Sosonkina; Zhao Zhang 010; Mark S. Gordon; Michael W. Schmidt (IPDPS Workshops, 2010)

Scaling of ab-initio nuclear physics calculations on multicore computer architectures. - Pieter Maris; Masha Sosonkina; James P. Vary; Esmond G. Ng; Chao Yang 001 (ICCS, 2010)

A comparison of alternatives for communicating with spawned processes. - Nicholas R. Radcliffe; Layne T. Watson; Masha Sosonkina (ACM Southeast Regional Conference, 2011)

Dynamic Adaptations in ab-initio Nuclear Physics Calculations on Multicore Computer Architectures. - Avinash Srinivasa; Masha Sosonkina; Pieter Maris; James P. Vary (IPDPS Workshops, 2011)

Dynamic Frequency Scaling and Energy Saving in Quantum Chemistry Applications. - Vaibhav Sundriyal; Masha Sosonkina; Fang Liu 028; Michael W. Schmidt (IPDPS Workshops, 2011)

Per-call Energy Saving Strategies in All-to-All Communications. - Vaibhav Sundriyal; Masha Sosonkina (EuroMPI, 2011)

A data management system for ab-initio nuclear physics applications. - Fang Liu 028; Ritu Mundhe; Masha Sosonkina; Chase Cockrell; Miles Aronnax; Pieter Maris; James P. Vary (SpringSim (HPC), 2011)

Communication with spawned processes. - Nicholas R. Radcliffe; Masha Sosonkina; Layne T. Watson (SpringSim (HPC), 2011)

Asynchronous invocation of adaptations in electronic structure calculations. - Sai Kiran Talamudupula; Masha Sosonkina; Michael W. Schmidt (SpringSim (HPC), 2011)

A Multilevel Parallelism Support for Multi-Physics Coupling. - Fang Liu 028; Masha Sosonkina (ICCS, 2011)

Web Service andWorkflow Abstractions to Large Scale Nuclear Physics Calculations. - Chathura Herath; Fang Liu 028; Suresh Marru; Lahiru Gunathilake; Masha Sosonkina; James P. Vary; Pieter Maris; Marlon E. Pierce (IEEE SCC, 2012)

Runtime Procedure for Energy Savings in Applications with Point-to-Point Communications. - Vaibhav Sundriyal; Masha Sosonkina; Alexander Gaenko (SBAC-PAD, 2012)

Effcient Shared-array Accesses in Ab Initio Nuclear Structure Calculations on Multicore Architectures. - Avinash Srinivasa; Masha Sosonkina; Pieter Maris; James P. Vary (ICCS, 2012)

Fragment Molecular Orbital Method Adaptations for Heterogeneous Computing Platforms. - Sai Kiran Talamudupula; Masha Sosonkina; Alexander Gaenko; Michael W. Schmidt (ICCS, 2012)

Leveraging GPUs in Ab Initio Nuclear Physics Calculations. - Dossay Oryspayev; Hugh D. Potter; Pieter Maris; Masha Sosonkina; James P. Vary; Sven Binder; Angelo Calci; Joachim Langhammer; Robert Roth (IPDPS Workshops, 2013)

Variable Block Algebraic Recursive Multilevel Solver (VBARMS) for Sparse Linear Systems. - Bruno Carpentieri; Jia Liao; Masha Sosonkina (PARCO, 2013)

Locality Optimization on a NUMA Architecture for Hybrid LU Factorization. - Adrien Rémy; Marc Baboulin; Masha Sosonkina; Brigitte Rozoy (PARCO, 2013)

Variable Block Multilevel Iterative Solution of General Sparse Linear Systems. - Bruno Carpentieri; Jia Liao; Masha Sosonkina (PPAM (2), 2013)

Initial investigation of a scheme to use instantaneous CPU power consumption for energy savings format. - Vaibhav Sundriyal; Masha Sosonkina (E2SC@SC, 2013)

Achieving energy efficiency during collective communications. - Vaibhav Sundriyal; Masha Sosonkina; Zhao Zhang 010 (Concurr. Comput. Pract. Exp., 2013)

Computational nuclear quantum many-body problem: The UNEDF project. - Scott Bogner; Aurel Bulgac; Joseph A. Carlson; Jonathan Engel; George L. Fann; Richard J. Furnstahl; Stefano Gandolfi 002; Gaute Hagen; Mihai Horoi; Calvin W. Johnson; Markus Kortelainen; Ewing L. Lusk; et al. (Comput. Phys. Commun., 2013)

Energy saving strategies for parallel applications with point-to-point communication phases. - Vaibhav Sundriyal; Masha Sosonkina; Alexander Gaenko; Zhao Zhang 010 (J. Parallel Distributed Comput., 2013)

Adjusting process count on demand for petascale global optimization. - Masha Sosonkina; Layne T. Watson; Nicholas R. Radcliffe; Raphael T. Haftka; Michael W. Trosset (Parallel Comput., 2013)

Energy Evaluation for Applications with Different Thread Affinities on the Intel Xeon Phi. - Gary Lawson; Masha Sosonkina; Yuzhong Shen (SBAC-PAD (Workshops), 2014)

An implementation of block conjugate gradient algorithm on CPU-GPU processors. - Hao Ji; Masha Sosonkina; Yaohang Li (Co-HPC@SC, 2014)

Performance and energy evaluation of CoMD on Intel Xeon Phi co-processors. - Gary Lawson; Masha Sosonkina; Yuzhong Shen (Co-HPC@SC, 2014)

Energy efficient communications in quantum chemistry applications. - Vaibhav Sundriyal; Masha Sosonkina; Alexander Gaenko (Comput. Sci. Res. Dev., 2014)

VBARMS: A variable block algebraic recursive multilevel solver for sparse linear systems. - Bruno Carpentieri; Jia Liao; Masha Sosonkina (J. Comput. Appl. Math., 2014)

Graph Partitioning Using Matrix Values for Preconditioning Symmetric Positive Definite Systems. - Eugene Vecharynski; Yousef Saad; Masha Sosonkina (SIAM J. Sci. Comput., 2014)

Automatic runtime frequency-scaling system for energy savings in parallel applications. - Vaibhav Sundriyal; Masha Sosonkina; Zhao Zhang 010 (J. Supercomput., 2014)

Using Random Butterfly Transformations in parallel schur complement-based preconditioning. - Marc Baboulin; Aygul Jamal; Masha Sosonkina (FedCSIS, 2015)

Changing CPU Frequency in CoMD Proxy Application Offloaded to Intel Xeon Phi Co-processors. - Gary Lawson; Masha Sosonkina; Yuzhong Shen (ICCS, 2015)

Modeling performance and energy for applications offloaded to Intel Xeon Phi. - Gary Lawson; Vaibhav Sundriyal; Masha Sosonkina; Yuzhong Shen (Co-HPC@SC, 2015)

Strategies to hide communication for a classical molecular dynamics proxy application. - Issakar Ngatang; Masha Sosonkina (SpringSim (HPS), 2015)

Performance analysis of distributed symmetric sparse matrix vector multiplication algorithm for multi-core architectures. - Dossay Oryspayev; Hasan Metin Aktulga; Masha Sosonkina; Pieter Maris; James P. Vary (Concurr. Comput. Pract. Exp., 2015)

Using the VBARMS method in parallel computing. - Bruno Carpentieri; Jia Liao; Masha Sosonkina; Aldo Bonfiglioli (CoRR, 2015)

Towards Modeling Energy Consumption of Xeon Phi. - Gary Lawson; Masha Sosonkina; Yuzhong Shen (CoRR, 2015)

Experimentation Procedure for Offloaded Mini-Apps Executed on Cluster Architectures with Xeon Phi Accelerators. - Gary Lawson; Vaibhav Sundriyal; Masha Sosonkina; Yuzhong Shen (CoRR, 2015)

Remark on Algorithm 897: VTDIRECT95: Serial and Parallel Codes for the Global Optimization Algorithm DIRECT. - Masha Sosonkina; Layne T. Watson; Jian He (ACM Trans. Math. Softw., 2015)

Runtime Power Limiting of Parallel Applications on Intel Xeon Phi Processors. - Gary Lawson; Vaibhav Sundriyal; Masha Sosonkina; Yuzhong Shen (E2SC@SC, 2016)

Power profiling and evaluating the effect of frequency scaling on NWChem. - Vaibhav Sundriyal; Ellie Fought; Masha Sosonkina; Theresa L. Windus (SpringSim (HPS), 2016)

A Hybrid CPU/GPU Approach for the Parallel Algebraic Recursive Multilevel Solver pARMS. - Aygul Jamal; Marc Baboulin; Amal Khabou; Masha Sosonkina (SYNASC, 2016)

Efficacy of the SU(3) scheme for ab initio large-scale calculations beyond the lightest nuclei. - Tomás Dytrych; Pieter Maris; Kristina D. Launey; Jerry P. Draayer; James P. Vary; Daniel Langr; Erik Saule; Mark A. Caprio; Ümit V. Çatalyürek; Masha Sosonkina (Comput. Phys. Commun., 2016)

Using the VBARMS method in parallel computing. - Bruno Carpentieri; Jia Liao; Masha Sosonkina; Aldo Bonfiglioli; Sven Baars (Parallel Comput., 2016)

Joint frequency scaling of processor and DRAM. - Vaibhav Sundriyal; Masha Sosonkina (J. Supercomput., 2016)

Empirical Mode Decomposition for Modeling of Parallel Applications on Intel Xeon Phi Processors. - Gary Lawson; Masha Sosonkina; Tal Ezer; Yuzhong Shen (CCGrid, 2017)

A Comparison of Soft-Fault Error Models in the Parallel Preconditioned Flexible GMRES. - Evan Coleman; Aygul Jamal; Marc Baboulin; Amal Khabou; Masha Sosonkina (PPAM (1), 2017)

Applicability of the Empirical Mode Decomposition for Power Traces of Large-Scale Applications. - Gary Lawson; Masha Sosonkina; Tal Ezer; Yuzhong Shen (PPAM (2), 2017)

Fault tolerant variants of the fine-grained parallel incomplete LU factorization. - Evan Coleman; Masha Sosonkina; Edmond Chow (SpringSim (HPC), 2017)

Evaluating effects of application based and automatic energy saving strategies on NWChem. - Vaibhav Sundriyal; Ellie Fought; Masha Sosonkina; Theresa L. Windus (SpringSim (HPC), 2017)

Runtime power-aware energy-saving scheme for parallel applications. - Vaibhav Sundriyal; Masha Sosonkina (Int. J. High Perform. Syst. Archit., 2017)

Saving time and energy with oversubscription and semi-direct Møller-Plesset second order perturbation methods. - Ellie Fought; Vaibhav Sundriyal; Masha Sosonkina; Theresa L. Windus (J. Comput. Chem., 2017)

Impacts of Three Soft-Fault Models on Hybrid Parallel Asynchronous Iterative Methods. - Evan Coleman; Erik J. Jensen; Masha Sosonkina (SBAC-PAD, 2018)

Convergence and resilience of the fine-grained parallel incomplete LU factorization for non-symmetric problems. - Evan Coleman; Masha Sosonkina (SpringSim (HPC), 2018)

Modeling a task-based matrix-matrix multiplication application for resilience decision making. - Erik Jensen 001; Masha Sosonkina (SpringSim (HPC), 2018)

Comparisons of core and uncore frequency scaling modes in quantum chemistry application GAMESS. - Vaibhav Sundriyal; Masha Sosonkina; Bryce M. Westheimer; Mark S. Gordon (SpringSim (HPC), 2018)

Self-stabilizing fine-grained parallel incomplete LU factorization. - Evan Coleman; Masha Sosonkina (Sustain. Comput. Informatics Syst., 2018)

Modeling of the CPU frequency to minimize energy consumption in parallel applications. - Vaibhav Sundriyal; Masha Sosonkina (Sustain. Comput. Informatics Syst., 2018)

Parallel Performance of an Iterative Solver Based on the Golub-Kahan Bidiagonalization. - Carola Kruse; Masha Sosonkina; Mario Arioli; Nicolas Tardieu; Ulrich Rüde (PPAM (1), 2019)

Enhancing Asynchronous Linear Solvers Through Randomization. - Evan Coleman; Erik J. Jensen; Masha Sosonkina (SpringSim, 2019)

Comparing Frequency Scaling Efficacy on Different Memory Technologies. - Vaibhav Sundriyal; Masha Sosonkina; Bryce M. Westheimer (SpringSim, 2019)

DeapSECURE: Empowering Students for Data- and Compute-Intensive Research in Cybersecurity through Training. - Wirawan Purwanto; Hongyi Wu; Masha Sosonkina; Karina Arcaute (PEARC, 2019)

Effect of frequency scaling granularity on energy-saving strategies. - Vaibhav Sundriyal; Kristopher Keipert; Masha Sosonkina; Mark S. Gordon (Int. J. High Perform. Comput. Appl., 2019)

Improving efficiency of semi-direct møller-plesset second-order perturbation methods through oversubscription on multiple nodes. - Ellie Fought; Vaibhav Sundriyal; Masha Sosonkina; Theresa L. Windus (J. Comput. Chem., 2019)

Predictive modeling of the performance of asynchronous iterative methods. - Erik J. Jensen; Evan Coleman; Masha Sosonkina (J. Supercomput., 2019)

Runtime power allocation approach for GAMESS hybrid CPU-GPU implementation. - Vaibhav Sundriyal; Masha Sosonkina; David Poole 004; Mark S. Gordon (Concurr. Comput. Pract. Exp., 2020)

Applying EMD/HHT analysis to power traces of applications executed on systems with Intel Xeon Phi. - Gary Lawson; Masha Sosonkina; Tal Ezer; Yuzhong Shen (Int. J. High Perform. Comput. Appl., 2020)

Parallel solution of saddle point systems with nested iterative solvers based on the Golub-Kahan Bidiagonalization. - Carola Kruse; Masha Sosonkina; Mario Arioli; Nicolas Tardieu; Ulrich Rüde (Concurr. Comput. Pract. Exp., 2021)

Fault Recovery Methods for Asynchronous Linear Solvers. - Evan Coleman; Erik J. Jensen; Masha Sosonkina (Int. J. Parallel Program., 2021)

A Project-Based Approach for Teaching Numerical Integration in Continuous Simulation. - Yuzhong Shen; Masha Sosonkina (ANNSIM, 2023)

Investigating the Use of Generative ai in M&S Education. - James F. Leathrum; Yuzhong Shen; Masha Sosonkina (WSC, 2024)

Runtime performance of a GAMESS quantum chemistry application offloaded to GPUs. - Masha Sosonkina; Gabriel Mateescu; Peng Xu; Tosaporn Sattasathuchana; Buu Pham; Mark S. Gordon; Sarom S. Leang (Concurr. Comput. Pract. Exp., 2024)

Heterogeneous Graph Backdoor Attack. - Jiawei Chen; Lusi Li; Daniel Takabi; Masha Sosonkina; Rui Ning (CoRR, 2025)