The MEPS server for identifying protein conformational epitopes. - Tiziana Castrignanò; Paolo D'Onorio De Meo; Danilo Carrabino; Massimiliano Orsini; Matteo Floris; Anna Tramontano (BMC Bioinform., 2007)

An automatic method for identifying surface proteins in bacteria: SLEP. - Emanuela Giombini; Massimiliano Orsini; Danilo Carrabino; Anna Tramontano (BMC Bioinform., 2010)

MAISTAS: a tool for automatic structural evaluation of alternative splicing products. - Matteo Floris; Domenico Raimondo; Guido Leoni; Massimiliano Orsini; Paolo Marcatili; Anna Tramontano (Bioinform., 2011)

Warehousing re-annotated cancer genes for biomarker meta-analysis. - Massimiliano Orsini; Antonella Travaglione; Enrico Capobianco (Comput. Methods Programs Biomed., 2013)

BlaSTorage: a fast package to parse, manage and store BLAST results. - Massimiliano Orsini; Simone Carcangiu (Source Code Biol. Medicine, 2013)

Orione, a web-based framework for NGS analysis in microbiology. - Gianmauro Cuccuru; Massimiliano Orsini; Andrea Pinna 003; Andrea Sbardellati; Nicola Soranzo; Antonella Travaglione; Paolo Uva; Gianluigi Zanetti; Giorgio Fotia (Bioinform., 2014)

Putative human sperm Interactome: a networks study. - Alessandra Ordinelli; Nicola Bernabò; Massimiliano Orsini; Mauro Mattioli; Barbara Barboni (BMC Syst. Biol., 2018)