Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics. - Raoul Jean Pierre Bonnal; Jan Aerts; George Githinji; Naohisa Goto; Daniel MacLean; Chase A. Miller; Hiroyuki Mishima; Massimiliano Pagani; Ricardo Ramirez-Gonzalez; Geert Smant; Francesco Strozzi; Rob Syme; et al. (Bioinform., 2012)

miRiadne: a web tool for consistent integration of miRNA nomenclature. - Raoul Jean Pierre Bonnal; Riccardo L. Rossi; Donatella Carpi; Valeria Ranzani; Sergio Abrignani; Massimiliano Pagani (Nucleic Acids Res., 2015)

OligoMinerApp: a web-server application for the design of genome-scale oligonucleotide in situ hybridization probes through the flexible OligoMiner environment. - Marco Passaro; Martina Martinovic; Valeria Bevilacqua; Elliot A. Hershberg; Grazisa Rossetti; Brian J. Beliveau; Raoul Jean Pierre Bonnal; Massimiliano Pagani (Nucleic Acids Res., 2020)