A Common Reference Framework for Analyzing/Comparing Proteins and Ligands. Fingerprints for Ligands And Proteins (FLAP): Theory and Application. - Massimo Baroni; Gabriele Cruciani; Simone Sciabola; Francesca Perruccio; Jonathan S. Mason (J. Chem. Inf. Model., 2007)

Targeting the Conformational Transitions of MDM2 and MDMX: Insights into Dissimilarities and Similarities of p53 Recognition. - Antonio Macchiarulo; Nicola Giacche; Andrea Carotti; Massimo Baroni; Gabriele Cruciani; Roberto Pellicciari (J. Chem. Inf. Model., 2008)

FLAP: GRID Molecular Interaction Fields in Virtual Screening. Validation using the DUD Data Set. - Simon Cross; Massimo Baroni; Emanuele Carosati; Paolo Benedetti; Sérgio Clementi (J. Chem. Inf. Model., 2010)

Molecular Interaction Fields and 3D-QSAR Studies of p53-MDM2 Inhibitors Suggest Additional Features of Ligand-Target Interaction. - Cristina Dezi; Andrea Carotti; Matteo Magnani; Massimo Baroni; Alessandro Padova; Gabriele Cruciani; Antonio Macchiarulo; Roberto Pellicciari (J. Chem. Inf. Model., 2010)

High-Throughput Virtual Screening of Proteins Using GRID Molecular Interaction Fields. - Simone Sciabola; Robert V. Stanton; James E. J. Mills; Maria M. Flocco; Massimo Baroni; Gabriele Cruciani; Francesca Perruccio; Jonathan S. Mason (J. Chem. Inf. Model., 2010)

GRID-Based Three-Dimensional Pharmacophores I: FLAPpharm, a Novel Approach for Pharmacophore Elucidation. - Simon Cross; Massimo Baroni; Laura Goracci; Gabriele Cruciani (J. Chem. Inf. Model., 2012)

GRID-Based Three-Dimensional Pharmacophores II: PharmBench, a Benchmark Data Set for Evaluating Pharmacophore Elucidation Methods. - Simon Cross; Francesco Ortuso; Massimo Baroni; Giosuè Costa; Simona Distinto; Federica Moraca; Stefano Alcaro; Gabriele Cruciani (J. Chem. Inf. Model., 2012)

A Pipeline To Enhance Ligand Virtual Screening: Integrating Molecular Dynamics and Fingerprints for Ligand and Proteins. - Francesca Spyrakis; Paolo Benedetti; Sergio Decherchi; Walter Rocchia; Andrea Cavalli; Stefano Alcaro; Francesco Ortuso; Massimo Baroni; Gabriele Cruciani (J. Chem. Inf. Model., 2015)

First virtual screening and experimental validation of inhibitors targeting GES-5 carbapenemase. - Francesca Spyrakis; Pierangelo Bellio; Antonio Quotadamo; Pasquale Linciano; Paolo Benedetti; Giulia D'Arrigo; Massimo Baroni; Laura Cendron; Giuseppe Celenza; Donatella Tondi (J. Comput. Aided Mol. Des., 2019)

CROMATIC: Cross-Relationship Map of Cavities from Coronaviruses. - Lydia Siragusa; Gabriele Menna; Fabrizio Buratta; Massimo Baroni; Jenny Desantis; Gabriele Cruciani; Laura Goracci (J. Chem. Inf. Model., 2022)

Getting Insights into Structural and Energetic Properties of Reciprocal Peptide-Protein Interactions. - Daniela Trisciuzzi; Lydia Siragusa; Massimo Baroni; Ida Autiero; Orazio Nicolotti; Gabriele Cruciani (J. Chem. Inf. Model., 2022)

An Integrated Machine Learning Model To Spot Peptide Binding Pockets in 3D Protein Screening. - Daniela Trisciuzzi; Lydia Siragusa; Massimo Baroni; Gabriele Cruciani; Orazio Nicolotti (J. Chem. Inf. Model., 2022)