Wavelets as basis functions to represent the coarse-graining potential in multiscale coarse graining approach. - Massimo Maiolo; Alberto Vancheri; Rolf Krause; Andrea Danani (J. Comput. Phys., 2015)

Progressive multiple sequence alignment with indel evolution. - Massimo Maiolo; Xiaolei Zhang; Manuel Gil; Maria Anisimova (BMC Bioinform., 2018)

ProPIP: a tool for progressive multiple sequence alignment with Poisson Indel Process. - Massimo Maiolo; Lorenzo Gatti; Diego Frei; Tiziano Leidi; Manuel Gil; Maria Anisimova (BMC Bioinform., 2021)