PubMeth: a cancer methylation database combining text-mining and expert annotation. - Maté Ongenaert; Leander Van Neste; Tim De Meyer; Gerben Menschaert; Sofie Bekaert; Wim Van Criekinge (Nucleic Acids Res., 2008)

Integrating automated literature searches and text mining in biomarker discovery. - Maté Ongenaert; Luc Dehaspe (BMC Bioinform., 2010)

miRBase Tracker: keeping track of microRNA annotation changes. - Gert Van Peer; Steve Lefever; Jasper Anckaert; Anneleen Beckers; Ali Rihani; Alan Van Goethem; Pieter-Jan Volders; Fjoralba Zeka; Maté Ongenaert; Pieter Mestdagh; Jo Vandesompele (Database J. Biol. Databases Curation, 2014)